Schema for WM + SDust - Genomic Intervals Masked by WindowMasker + SDust

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Schema for WM + SDust - Genomic Intervals Masked by WindowMasker + SDust

Database: dm6 Primary Table: windowmaskerSdust Row Count: 767,844

field	example	SQL type
`bin`	585	`smallint(5) unsigned`
`chrom`	chr2L	`varchar(255)`
`chromStart`	0	`int(10) unsigned`
`chromEnd`	5205	`int(10) unsigned`
`name`	wm_0	`varchar(255)`

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	chr2L	0	5205	wm_0
585	chr2L	5222	5238	wm_1
585	chr2L	5295	5421	wm_2
585	chr2L	5455	5461	wm_3
585	chr2L	5528	5549	wm_4
585	chr2L	5568	5606	wm_5
585	chr2L	5650	5673	wm_6
585	chr2L	5677	5683	wm_7
585	chr2L	5703	5734	wm_8
585	chr2L	5867	5923	wm_9

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

WM + SDust (windowmaskerSdust) Track Description


	Description This track depicts masked sequence as determined by WindowMasker. The WindowMasker tool is included in the NCBI C++ toolkit. The source code for the entire toolkit is available from the NCBI FTP site. Methods To create this track, WindowMasker was run with the following parameters: windowmasker -mk_counts true -input dm6.fa -output wm_counts windowmasker -ustat wm_counts -sdust true -input dm6.fa -output repeats.bed The repeats.bed (BED3) file was loaded into the "windowmaskerSdust" table for this track. References Morgulis A, Gertz EM, Schäffer AA, Agarwala R. WindowMasker: window-based masker for sequenced genomes. Bioinformatics. 2006 Jan 15;22(2):134-41. PMID: 16287941