Schema for wAna Alignments - Regions with Sequence Similarity to wAna Genome Assembly

Database: dm6 Primary Table: wAna1_censor Row Count: 7,423

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	50979	`int(10) unsigned`	range
`chromEnd`	51548	`int(10) unsigned`	range
`name`	AAGB01000379	`varchar(255)`	values
`score`	600	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	chr2L	50979	51548	AAGB01000379	600	+
585	chr2L	55596	55665	AAGB01000007	308	+
585	chr2L	60253	60360	AAGB01000007	309	-
585	chr2L	65625	65763	AAGB01000007	325	+
585	chr2L	113031	113178	AAGB01000023	455	+
585	chr2L	116512	116670	AAGB01000337	587	-
586	chr2L	138429	138633	AAGB01000133	352	+
586	chr2L	172607	172676	AAGB01000209	277	+
587	chr2L	350990	351254	AAGB01000180	333	+
590	chr2L	689942	690448	AAGB01000056	455	+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

wAna Alignments (wAna1_alignments) Track Description

Description

This track shows the regions with sequence similarity to the genomic sequence of the Wolbachia endosymbiont of Drosophila ananassae (wAna). The wAna genome sequence was obtained from NCBI through the BioProject accession number PRJNA13365.

Reference

Salzberg SL, Dunning Hotopp JC, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC. Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biol. 2005;6(3):R23.