Schema for wAna Alignments - Regions with Sequence Similarity to wAna Genome Assembly

Database: dm6 Primary Table: wAna1_megablast Row Count: 443

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`matches`	98	`int(10) unsigned`	range
`misMatches`	43	`int(10) unsigned`	range
`repMatches`	0	`int(10) unsigned`	range
`nCount`	0	`int(10) unsigned`	range
`qNumInsert`	0	`int(10) unsigned`	range
`qBaseInsert`	0	`int(10) unsigned`	range
`tNumInsert`	0	`int(10) unsigned`	range
`tBaseInsert`	0	`int(10) unsigned`	range
`strand`	+	`char(2)`	values
`qName`	AAGB01000023	`varchar(255)`	values
`qSize`	11609	`int(10) unsigned`	range
`qStart`	7466	`int(10) unsigned`	range
`qEnd`	7607	`int(10) unsigned`	range
`tName`	chr2L	`varchar(255)`	values
`tSize`	23513712	`int(10) unsigned`	range
`tStart`	113031	`int(10) unsigned`	range
`tEnd`	113172	`int(10) unsigned`	range
`blockCount`	1	`int(10) unsigned`	range
`blockSizes`	141,	`longblob`
`qStarts`	7466,	`longblob`
`tStarts`	113031,	`longblob`

Sample Rows

bin	matches	misMatches	qNumInsert	qBaseInsert	tNumInsert	tBaseInsert	strand	qName	qSize	qStart	qEnd	tName	tSize	tStart	tEnd	blockCount	blockSizes	qStarts	tStarts
585	98	43	0	0	0	0	+	AAGB01000023	11609	7466	7607	chr2L	23513712	113031	113172	1	141,	7466,	113031,
662	200	88	0	0	0	0	+	AAGB01000057	6297	5447	5735	chr2L	23513712	10190177	10190465	1	288,	5447,	10190177,
664	261	108	3	8	3	8	+	AAGB01000390	1125	704	1081	chr2L	23513712	10357051	10357428	7	85,4,9,21,155,3,92,	704,789,793,806,830,985,989,	10357051,10357139,10357147,10357156,10357177,10357333,10357336,
664	261	108	3	8	3	8	-	AAGB01000198	1487	892	1269	chr2L	23513712	10357051	10357428	7	85,4,9,21,155,3,92,	218,303,307,320,344,499,503,	10357051,10357139,10357147,10357156,10357177,10357333,10357336,
749	716	313	11	112	2	3	+	AAGB01000087	3598	1977	3118	chr2L	23513712	21556047	21557079	14	70,121,28,84,191,5,313,6,4,14,10,138,3,42,	1977,2057,2184,2249,2334,2552,2576,2892,2901,2908,2923,2933,3073,3076,	21556047,21556117,21556238,21556266,21556350,21556541,21556546,21556859,21556865,21556869,21556883,21556894,21557032,21557037,
758	93	29	1	1	0	0	-	AAGB01000358	1181	3	126	chr2L	23513712	22764810	22764932	2	45,77,	1055,1101,	22764810,22764855,
760	149	62	1	2	2	2	-	AAGB01000067	4845	4418	4631	chr2L	23513712	22972214	22972427	4	170,6,5,30,	214,384,390,397,	22972214,22972385,22972392,22972397,
762	85	31	0	0	0	0	-	AAGB01000067	4845	4461	4577	chr2L	23513712	23202716	23202832	1	116,	268,	23202716,
762	85	31	0	0	0	0	-	AAGB01000067	4845	4461	4577	chr2L	23513712	23208070	23208186	1	116,	268,	23208070,
762	85	31	0	0	0	0	-	AAGB01000067	4845	4461	4577	chr2L	23513712	23213424	23213540	1	116,	268,	23213424,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

wAna Alignments (wAna1_alignments) Track Description

Description

This track shows the regions with sequence similarity to the genomic sequence of the Wolbachia endosymbiont of Drosophila ananassae (wAna). The wAna genome sequence was obtained from NCBI through the BioProject accession number PRJNA13365.

Reference

Salzberg SL, Dunning Hotopp JC, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC. Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biol. 2005;6(3):R23.