Schema for wAna Alignments - Regions with Sequence Similarity to wAna Genome Assembly

Database: dm6 Primary Table: wAna1_repeatmasker Row Count: 5,858

field	example	SQL type	info
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	46458	`int(10) unsigned`	range
`chromEnd`	46563	`int(10) unsigned`	range
`name`	AAGB01000007	`varchar(255)`	values
`score`	963	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`thickStart`	46458	`int(10) unsigned`	range
`thickEnd`	46563	`int(10) unsigned`	range
`reserved`	0	`int(10) unsigned`	range
`repeatClass`	Unspecified	`varchar(255)`	values
`swScore`	322	`int(10) unsigned`	range

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	repeatClass	swScore
chr2L	46458	46563	AAGB01000007	963	-	46458	46563	Unspecified	322
chr2L	51475	51548	AAGB01000379	976	+	51475	51548	Unspecified	334
chr2L	55615	55665	AAGB01000007	984	+	55615	55665	Unspecified	289
chr2L	56774	56900	AAGB01000377	972	+	56774	56900	Unspecified	352
chr2L	60253	60360	AAGB01000337	966	-	60253	60360	Unspecified	288
chr2L	65664	65763	AAGB01000377	971	-	65664	65763	Unspecified	300
chr2L	113031	113178	AAGB01000023	968	+	113031	113178	Unspecified	355
chr2L	116512	116670	AAGB01000337	968	-	116512	116670	Unspecified	504
chr2L	172607	172676	AAGB01000337	974	-	172607	172676	Unspecified	288
chr2L	178204	178338	AAGB01000337	964	-	178204	178338	Unspecified	278

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

wAna Alignments (wAna1_alignments) Track Description

Description

This track shows the regions with sequence similarity to the genomic sequence of the Wolbachia endosymbiont of Drosophila ananassae (wAna). The wAna genome sequence was obtained from NCBI through the BioProject accession number PRJNA13365.

Reference

Salzberg SL, Dunning Hotopp JC, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC. Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biol. 2005;6(3):R23.