Schema for wMel Alignments - Regions with Sequence Similarity to wMel Genome Assembly

Database: dm6 Primary Table: wMel1_censor Row Count: 1,015

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	113031	`int(10) unsigned`	range
`chromEnd`	113253	`int(10) unsigned`	range
`name`	AE017196	`varchar(255)`	values
`score`	489	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	chr2L	113031	113253	AE017196	489	+
586	chr2L	234741	234909	AE017196	298	+
586	chr2L	241045	241120	AE017196	264	-
586	chr2L	241619	241664	AE017196	256	+
588	chr2L	457814	457854	AE017196	251	-
589	chr2L	596551	596598	AE017196	256	-
589	chr2L	630508	630602	AE017196	252	+
590	chr2L	729689	729835	AE017196	367	-
593	chr2L	1135012	1135056	AE017196	278	+
594	chr2L	1191689	1191896	AE017196	334	-

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

wMel Alignments (wMel1_alignments) Track Description

Description

This track shows the regions with sequence similarity to the genomic sequence of the Wolbachia wMel strain. The wMel genome sequence was obtained from the GenBank record NC_002978.

Reference

Wu M, et al. Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. PLoS Biol. 2004 Mar;2(3):E69.