Schema for wRi Alignments - Regions with Sequence Similarity to wRi Genome Assembly

Database: dm6 Primary Table: wRi1_censor Row Count: 1,166

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	113031	`int(10) unsigned`	range
`chromEnd`	113253	`int(10) unsigned`	range
`name`	CP001391	`varchar(255)`	values
`score`	489	`int(10) unsigned`	range
`strand`	-	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	chr2L	113031	113253	CP001391	489	-
586	chr2L	234741	234909	CP001391	298	+
586	chr2L	241619	241664	CP001391	256	+
587	chr2L	328256	328302	CP001391	259	+
588	chr2L	457814	457854	CP001391	251	-
590	chr2L	729689	729835	CP001391	367	-
592	chr2L	946577	946674	CP001391	269	+
593	chr2L	1135006	1135068	CP001391	280	-
594	chr2L	1191689	1191896	CP001391	316	-
596	chr2L	1499028	1499085	CP001391	266	-

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

wRi Alignments (wRi1_alignments) Track Description

Description

This track shows the regions with sequence similarity to the genomic sequence of the Wolbachia wRi strain. The wRi genome sequence was obtained from the GenBank record CP001391.

Reference

Klasson L, et al. The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans. Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5725-30.