Schema for wRi Alignments - Regions with Sequence Similarity to wRi Genome Assembly

Database: dm6 Primary Table: wRi1_megablast Row Count: 55

field	example	SQL type	info
`bin`	631	`smallint(5) unsigned`	range
`matches`	415	`int(10) unsigned`	range
`misMatches`	216	`int(10) unsigned`	range
`repMatches`	0	`int(10) unsigned`	range
`nCount`	0	`int(10) unsigned`	range
`qNumInsert`	2	`int(10) unsigned`	range
`qBaseInsert`	2	`int(10) unsigned`	range
`tNumInsert`	2	`int(10) unsigned`	range
`tBaseInsert`	2	`int(10) unsigned`	range
`strand`	-	`char(2)`	values
`qName`	CP001391	`varchar(255)`	values
`qSize`	1445873	`int(10) unsigned`	range
`qStart`	995742	`int(10) unsigned`	range
`qEnd`	996375	`int(10) unsigned`	range
`tName`	chr2L	`varchar(255)`	values
`tSize`	23513712	`int(10) unsigned`	range
`tStart`	6061203	`int(10) unsigned`	range
`tEnd`	6061836	`int(10) unsigned`	range
`blockCount`	5	`int(10) unsigned`	range
`blockSizes`	60,8,314,7,242,	`longblob`
`qStarts`	449498,449559,449567,449882...	`longblob`
`tStarts`	6061203,6061263,6061272,606...	`longblob`

Sample Rows

bin	matches	misMatches	qNumInsert	qBaseInsert	tNumInsert	tBaseInsert	strand	qName	qSize	qStart	qEnd	tName	tSize	tStart	tEnd	blockCount	blockSizes	qStarts	tStarts
631	415	216	2	2	2	2	-	CP001391	1445873	995742	996375	chr2L	23513712	6061203	6061836	5	60,8,314,7,242,	449498,449559,449567,449882,449889,	6061203,6061263,6061272,6061586,6061594,
662	200	88	0	0	0	0	-	CP001391	1445873	266524	266812	chr2L	23513712	10190177	10190465	1	288,	1179061,	10190177,
664	261	108	3	8	3	8	-	CP001391	1445873	511090	511467	chr2L	23513712	10357051	10357428	7	85,4,9,21,155,3,92,	934406,934491,934495,934508,934532,934687,934691,	10357051,10357139,10357147,10357156,10357177,10357333,10357336,
676	380	183	5	10	5	7	-	CP001391	1445873	1017239	1017812	chr2L	23513712	12000141	12000711	11	90,6,113,8,17,3,233,14,7,4,68,	428061,428151,428158,428271,428281,428300,428303,428539,428553,428560,428566,	12000141,12000232,12000238,12000353,12000361,12000378,12000383,12000616,12000631,12000639,12000643,
693	228	112	1	1	1	1	+	CP001391	1445873	954937	955278	chr2R	25286936	14253745	14254086	3	257,6,77,	954937,955194,955201,	14253745,14254003,14254009,
693	92	36	0	0	0	0	+	CP001391	1445873	955873	956001	chr2R	25286936	14254852	14254980	1	128,	955873,	14254852,
719	467	251	3	4	5	10	+	CP001391	1445873	995445	996167	chr2R	25286936	17596192	17596920	9	67,13,3,8,113,11,322,20,161,	995445,995514,995527,995530,995538,995651,995663,995985,996006,	17596192,17596259,17596275,17596281,17596291,17596405,17596416,17596739,17596759,
719	135	59	1	1	1	1	+	CP001391	1445873	996315	996510	chr2R	25286936	17597068	17597263	3	48,5,141,	996315,996364,996369,	17597068,17597116,17597122,
732	700	404	4	10	5	13	+	CP001391	1445873	329971	331085	chr2R	25286936	19393115	19394232	10	120,134,11,19,7,290,10,104,9,400,	329971,330091,330225,330239,330261,330268,330559,330569,330676,330685,	19393115,19393238,19393376,19393387,19393406,19393415,19393705,19393716,19393820,19393832,
756	114	47	0	0	0	0	-	CP001391	1445873	1032159	1032320	chr2R	25286936	22493340	22493501	1	161,	413553,	22493340,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

wRi Alignments (wRi1_alignments) Track Description

Description

This track shows the regions with sequence similarity to the genomic sequence of the Wolbachia wRi strain. The wRi genome sequence was obtained from the GenBank record CP001391.

Reference

Klasson L, et al. The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans. Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5725-30.