Schema for wRi Alignments - Regions with Sequence Similarity to wRi Genome Assembly

Database: dm6 Primary Table: wRi1_repeatmasker Row Count: 244

field	example	SQL type	info
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	113031	`int(10) unsigned`	range
`chromEnd`	113178	`int(10) unsigned`	range
`name`	CP001391	`varchar(255)`	values
`score`	968	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`thickStart`	113031	`int(10) unsigned`	range
`thickEnd`	113178	`int(10) unsigned`	range
`reserved`	0	`int(10) unsigned`	range
`repeatClass`	Unspecified	`varchar(255)`	values
`swScore`	355	`int(10) unsigned`	range

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	repeatClass	swScore
chr2L	113031	113178	CP001391	968	-	113031	113178	Unspecified	355
chr2L	729689	729835	CP001391	965	-	729689	729835	Unspecified	271
chr2L	1184431	1184547	CP001391	968	-	1184431	1184547	Unspecified	273
chr2L	1965441	1965486	CP001391	984	-	1965441	1965486	Unspecified	269
chr2L	5527511	5527680	CP001391	963	-	5527511	5527680	Unspecified	368
chr2L	6061006	6061103	CP001391	971	-	6061006	6061103	Unspecified	303
chr2L	6061190	6062020	CP001391	963	-	6061190	6062020	Unspecified	1218
chr2L	6965443	6965550	CP001391	966	-	6965443	6965550	Unspecified	269
chr2L	7222473	7222760	CP001391	955	-	7222473	7222760	Unspecified	287
chr2L	8290732	8290787	CP001391	978	+	8290732	8290787	Unspecified	267

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

wRi Alignments (wRi1_alignments) Track Description

Description

This track shows the regions with sequence similarity to the genomic sequence of the Wolbachia wRi strain. The wRi genome sequence was obtained from the GenBank record CP001391.

Reference

Klasson L, et al. The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans. Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5725-30.