Schema for Wolbachia Proteins - TBLASTN Alignment of Proteins from Wolbachia

Database: dm6 Primary Table: censor_wAna1_proteins Row Count: 12,771

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	48998	`int(10) unsigned`	range
`chromEnd`	49286	`int(10) unsigned`	range
`name`	EAL57928.1	`varchar(255)`	values
`score`	133	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	chr2L	48998	49286	EAL57928.1	133	+
585	chr2L	49993	50710	EAL59040.1	321	+
585	chr2L	50719	51607	EAL57878.1	663	+
585	chr2L	51607	51862	EAL59041.1	188	+
585	chr2L	112686	113379	EAL59048.1	477	+
585	chr2L	124596	124959	EAL58976.1	157	-
586	chr2L	189770	190544	EAL58785.1	170	+
586	chr2L	217244	218102	EAL58785.1	143	-
586	chr2L	236574	237201	EAL58785.1	134	-
586	chr2L	253570	253864	EAL58651.1	200	-

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Wolbachia Proteins (wolbachia_proteins) Track Description

Description

This track shows the regions with sequence similarity to the annotated proteins of different Wolbachia species that were detected by CENSOR using the TBLASTN program. The protein sequences were retrieved from GenBank under the following BioProject accession numbers:

Species	BioProject Accession
wAna	PRJNA13365
wRi	PRJNA33273
wMel	PRJNA272

Reference

Salzberg SL, Dunning Hotopp JC, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC. Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biol. 2005;6(3):R23.

Klasson L, et al. The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans. Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5725-30.

Wu M, et al. Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. PLoS Biol. 2004 Mar;2(3):E69.