Schema for Wolbachia Proteins - TBLASTN Alignment of Proteins from Wolbachia

Database: dm6 Primary Table: censor_wRi1_proteins Row Count: 1,657

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	112686	`int(10) unsigned`	range
`chromEnd`	113379	`int(10) unsigned`	range
`name`	ACN94969.1	`varchar(255)`	values
`score`	477	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	chr2L	112686	113379	ACN94969.1	477	+
585	chr2L	124596	124959	ACN95095.1	157	-
586	chr2L	189770	190544	ACN95188.1	170	+
586	chr2L	195661	196228	ACN95492.1	137	+
586	chr2L	217244	218102	ACN95188.1	143	-
586	chr2L	234642	236151	ACN95349.1	423	-
586	chr2L	236574	237201	ACN95188.1	134	-
586	chr2L	253570	253864	ACN94894.1	200	-
588	chr2L	406964	407282	ACN94893.1	153	+
588	chr2L	407354	407666	ACN94893.1	167	+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Wolbachia Proteins (wolbachia_proteins) Track Description

Description

This track shows the regions with sequence similarity to the annotated proteins of different Wolbachia species that were detected by CENSOR using the TBLASTN program. The protein sequences were retrieved from GenBank under the following BioProject accession numbers:

Species	BioProject Accession
wAna	PRJNA13365
wRi	PRJNA33273
wMel	PRJNA272

Reference

Salzberg SL, Dunning Hotopp JC, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC. Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biol. 2005;6(3):R23.

Klasson L, et al. The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans. Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5725-30.

Wu M, et al. Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. PLoS Biol. 2004 Mar;2(3):E69.