Schema for ucscToRefSeq

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Database: dm6 Primary Table: ucscToRefSeq Row Count: 1,870 Data last updated: 2022-10-21

field	example	SQL type	info
`chrom`	chrX	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	23542271	`int(10) unsigned`	range
`name`	NC_004354.4	`varchar(255)`	values

Connected Tables and Joining Fields


	dm6.chromInfo.chrom (via ucscToRefSeq.chrom)

Sample Rows

chrom	chromEnd	name
chrX	23542271	NC_004354.4
chr2L	23513712	NT_033779.5
chr2R	25286936	NT_033778.4
chr3L	28110227	NT_037436.4
chr3R	32079331	NT_033777.3
chr4	1348131	NC_004353.4
chrY	3667352	NC_024512.1
chrX_CP007103v1_random	33320	NW_007931105.1
chrX_CP007104v1_random	27447	NW_007931106.1
chrX_DS483648v1_random	13940	NW_001844937.1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RefSeq Acc (ucscToRefSeq) Track Description


	Description This track associates UCSC Genome Browser chromosome names to accession identifiers from the NCBI Reference Sequence Database (RefSeq). The data were downloaded from the NCBI assembly database. Credits The data for this track was prepared by Hiram Clawson.

Description