Description
This track depicts the differences between the D. mojavensis Comparative Analysis Freeze 1 (CAF1)
assembly and the improved D. mojavensis assembly produced by the GEP.
The two assemblies are aligned against each other using LAST with
default parameters followed by the UCSC whole genome alignment
protocol.
References
Chain/Net
Kent WJ, Baertsch R, Hinrichs A, Miller W, and Haussler D.
Evolution's cauldron: Duplication, deletion, and rearrangement
in the mouse and human genomes.
Proc Natl Acad Sci USA 2003 100(20): 11484-11489.
LAST
Kielbasa SM, Wan R, Sato K, Horton P, Frith MC.
Adaptive seeds tame genomic sequence comparison.
Genome Res. 2011 Mar;21(3):487-93.
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