EDTA TEanno Repeats Track Settings
 
Intact and Fragmented Repeats Identified by EDTA (TEanno)   (All Variation and Repeats tracks)

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 Configure 		 Repeat Regions  Repeat Regions Identified by EDTA   Schema 
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 Configure 		 TSDs  Target Site Duplications for EDTA Repeats   Schema 
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 Configure 		 Long Terminal Repeats  Long Terminal Repeats for EDTA Repeats   Schema 
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 Configure 		 Copia LTR  Copia LTR Retrotransposons Identified by EDTA   Schema 
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 Configure 		 Gypsy LTR  Gypsy LTR Retrotransposons Identified by EDTA   Schema 
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 Configure 		 LTR Retrotransposons  LTR Retrotransposons Identified by EDTA   Schema 
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 Configure 		 LINE Elements  LINE Elements Identified by EDTA   Schema 
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 Configure 		 Penelope Elements  Penelope Elements Identified by EDTA   Schema 
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 Configure 		 CACTA TIR  CACTA TIR Transposons Identified by EDTA   Schema 
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 Configure 		 Mutator TIR  Mutator TIR Transposons Identified by EDTA   Schema 
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 Configure 		 PIF Harbinger TIR  PIF Harbinger TIR Transposons Identified by EDTA   Schema 
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 Configure 		 Tc1 Mariner TIR  Tc1 Mariner TIR Transposons Identified by EDTA   Schema 
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 Configure 		 hAT TIR  hAT TIR Transposons Identified by EDTA   Schema 
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 Configure 		 Polinton  Polinton Identified by EDTA   Schema 
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 Configure 		 Helitron  Helitrons Identified by EDTA   Schema 
    

Description

This track shows the locations of intact repeats and fragmented repeats identified by EDTA.

References

Ou S, Su W, Liao Y, Chougule K, Agda JRA, Hellinga AJ, Lugo CSB, Elliott TA, Ware D, Peterson T, Jiang N, Hirsch CN, Hufford MB. Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline. Genome Biol. 2019 Dec 16;20(1):275. doi: 10.1186/s13059-019-1905-y.