EDTA Intact Repeats Track Settings
 
Intact Repeats Identified by EDTA   (All Variation and Repeats tracks)

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Show only items with score at or above:   (range: 0 to 1000)


Display data as a density graph:

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 Configure 		 Intact Repeat Regions  Intact Repeat Regions Identified by EDTA   Schema 
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 Configure 		 TSDs  Target Site Duplications for EDTA Intact Repeats   Schema 
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 Configure 		 Long Terminal Repeats  Long Terminal Repeats for EDTA Intact Repeats   Schema 
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 Configure 		 Copia LTR  EDTA Intact Copia LTR Retrotransposons   Schema 
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 Configure 		 Gypsy LTR  EDTA Intact Gypsy LTR Retrotransposons   Schema 
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 Configure 		 LTR Retrotransposons  EDTA Intact LTR Retrotransposons   Schema 
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 Configure 		 CACTA TIR  EDTA Intact CACTA TIR Transposons   Schema 
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 Configure 		 Mutator TIR  EDTA Intact Mutator TIR Transposons   Schema 
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 Configure 		 PIF Harbinger TIR  EDTA Intact PIF Harbinger TIR Transposons   Schema 
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 Configure 		 Tc1 Mariner TIR  EDTA Intact Tc1 Mariner TIR Transposons   Schema 
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 Configure 		 hAT TIR  EDTA Intact hAT TIR Transposons   Schema 
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 Configure 		 Helitron  EDTA Intact Helitrons   Schema 
    

Description

This track shows the locations of intact repeats identified by EDTA.

References

Ou S, Su W, Liao Y, Chougule K, Agda JRA, Hellinga AJ, Lugo CSB, Elliott TA, Ware D, Peterson T, Jiang N, Hirsch CN, Hufford MB. Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline. Genome Biol. 2019 Dec 16;20(1):275. doi: 10.1186/s13059-019-1905-y.