Subtracks⇓  Description⇓  modENCODE Histone Modifications (R5) Track Settings
 
modENCODE ChIP-chip Data for Histone Modifications (R5)   (All ChIP Seq Tracks)

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Select subtracks by stage group and histone mark:
 All Stage Group BG3  Kc167  S2 
Histone Mark
H1 
H2Av 
H2BK5ac 
H2Bubi 
H3 
H3K18ac 
H3K23ac 
H3K27ac 
H3K27me1 
H3K27me2 
H3K27me3 
H3K36me1 
H3K36me3 
H3K4me1 
H3K4me2 
H3K4me3 
H3K79me1 
H3K79me2 
H3K79me3 
H3K9ac 
H3K9acS10P 
H3K9me1 
H3K9me2 
H3K9me3 
H4 
H4K12ac 
H4K16ac 
H4K20me1 
H4K5ac 
H4K8ac 
H4acTetra 
Histone Mark
 All Stage Group BG3  Kc167  S2 
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List subtracks: only selected/visible    all    (186 of 186 selected)  
 
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 H1  GSE32767: H1 Enriched Clusters for BG3 Cells   Schema 
 
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 H1  GSE32767: H1 Smoothed M-values for BG3 Cells   Schema 
 
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 H1  GSE45081: H1 Enriched Clusters for Kc167 Cells   Schema 
 
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 H1  GSE45081: H1 Smoothed M-values for Kc167 Cells   Schema 
 
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 H1  GSE32768: H1 Enriched Clusters for S2 Cells   Schema 
 
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 H1  GSE32768: H1 Smoothed M-values for S2 Cells   Schema 
 
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 H2Av  GSE45110: H2Av Enriched Clusters for BG3 Cells   Schema 
 
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 H2Av  GSE45110: H2Av Smoothed M-values for BG3 Cells   Schema 
 
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 H2Av  GSE32751: H2Av Enriched Clusters for Kc167 Cells   Schema 
 
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 H2Av  GSE32751: H2Av Smoothed M-values for Kc167 Cells   Schema 
 
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 H2Av  GSE27731: H2Av Enriched Clusters for S2 Cells   Schema 
 
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 H2Av  GSE27731: H2Av Smoothed M-values for S2 Cells   Schema 
 
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 H2BK5ac  GSE32752: H2BK5ac Enriched Clusters for S2 Cells   Schema 
 
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 H2BK5ac  GSE32752: H2BK5ac Smoothed M-values for S2 Cells   Schema 
 
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 H2Bubi  GSE20771: H2Bubi Enriched Clusters for BG3 Cells   Schema 
 
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 H2Bubi  GSE20771: H2Bubi Smoothed M-values for BG3 Cells   Schema 
 
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 H2Bubi  GSE20772: H2Bubi Enriched Clusters for Kc167 Cells   Schema 
 
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 H2Bubi  GSE20772: H2Bubi Smoothed M-values for Kc167 Cells   Schema 
 
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 H2Bubi  GSE20773: H2Bubi Enriched Clusters for S2 Cells   Schema 
 
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 H2Bubi  GSE20773: H2Bubi Smoothed M-values for S2 Cells   Schema 
 
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 H3  GSE32769: H3 Enriched Clusters for BG3 Cells   Schema 
 
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 H3  GSE32769: H3 Smoothed M-values for BG3 Cells   Schema 
 
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 H3  GSE44518: H3 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3  GSE44518: H3 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3  GSE44465: H3 Enriched Clusters for S2 Cells   Schema 
 
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 H3  GSE44465: H3 Smoothed M-values for S2 Cells   Schema 
 
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 H3K18ac  GSE20774: H3K18ac Enriched Clusters for BG3 Cells   Schema 
 
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 H3K18ac  GSE20774: H3K18ac Smoothed M-values for BG3 Cells   Schema 
 
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 H3K18ac  GSE27733: H3K18ac Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K18ac  GSE27733: H3K18ac Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K18ac  GSE20775: H3K18ac Enriched Clusters for S2 Cells   Schema 
 
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 H3K18ac  GSE20775: H3K18ac Smoothed M-values for S2 Cells   Schema 
 
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 H3K23ac  GSE20776: H3K23ac Enriched Clusters for BG3 Cells   Schema 
 
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 H3K23ac  GSE20776: H3K23ac Smoothed M-values for BG3 Cells   Schema 
 
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 H3K23ac  GSE27788: H3K23ac Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K23ac  GSE27788: H3K23ac Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K23ac  GSE20777: H3K23ac Enriched Clusters for S2 Cells   Schema 
 
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 H3K23ac  GSE20777: H3K23ac Smoothed M-values for S2 Cells   Schema 
 
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 H3K27ac  GSE20778: H3K27ac Enriched Clusters for BG3 Cells   Schema 
 
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 H3K27ac  GSE20778: H3K27ac Smoothed M-values for BG3 Cells   Schema 
 
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 H3K27ac  GSE32824: H3K27ac Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K27ac  GSE32824: H3K27ac Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K27ac  GSE20779: H3K27ac Enriched Clusters for S2 Cells   Schema 
 
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 H3K27ac  GSE20779: H3K27ac Smoothed M-values for S2 Cells   Schema 
 
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 H3K27me1  GSE51965: H3K27me1 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K27me1  GSE51965: H3K27me1 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K27me1  GSE51966: H3K27me1 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K27me1  GSE51966: H3K27me1 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K27me1  GSE44507: H3K27me1 Enriched Clusters for S2 Cells   Schema 
 
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 H3K27me1  GSE44507: H3K27me1 Smoothed M-values for S2 Cells   Schema 
 
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 H3K27me2  GSE27789: H3K27me2 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K27me2  GSE27789: H3K27me2 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K27me2  GSE32825: H3K27me2 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K27me2  GSE32825: H3K27me2 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K27me2  GSE27790: H3K27me2 Enriched Clusters for S2 Cells   Schema 
 
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 H3K27me2  GSE27790: H3K27me2 Smoothed M-values for S2 Cells   Schema 
 
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 H3K27me3  GSE20780: H3K27me3 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K27me3  GSE20780: H3K27me3 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K27me3  GSE45083: H3K27me3 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K27me3  GSE45083: H3K27me3 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K27me3  GSE20781: H3K27me3 Enriched Clusters for S2 Cells   Schema 
 
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 H3K27me3  GSE20781: H3K27me3 Smoothed M-values for S2 Cells   Schema 
 
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 H3K36me1  GSE20782: H3K36me1 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K36me1  GSE20782: H3K36me1 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K36me1  GSE27738: H3K36me1 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K36me1  GSE27738: H3K36me1 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K36me1  GSE25374: H3K36me1 Enriched Clusters for S2 Cells   Schema 
 
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 H3K36me1  GSE25374: H3K36me1 Smoothed M-values for S2 Cells   Schema 
 
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 H3K36me3  GSE20783: H3K36me3 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K36me3  GSE20783: H3K36me3 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K36me3  GSE20784: H3K36me3 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K36me3  GSE20784: H3K36me3 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K36me3  GSE20785: H3K36me3 Enriched Clusters for S2 Cells   Schema 
 
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 H3K36me3  GSE20785: H3K36me3 Smoothed M-values for S2 Cells   Schema 
 
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 H3K4me1  GSE23468: H3K4me1 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K4me1  GSE23468: H3K4me1 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K4me1  GSE32826: H3K4me1 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K4me1  GSE32826: H3K4me1 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K4me1_newlot2  GSE45085: H3K4me1_newlot2 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K4me1_newlot2  GSE45085: H3K4me1_newlot2 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K4me1  GSE20786: H3K4me1 Enriched Clusters for S2 Cells   Schema 
 
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 H3K4me1  GSE20786: H3K4me1 Smoothed M-values for S2 Cells   Schema 
 
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 H3K4me2_07-030_M  GSE23469: H3K4me2_07-030_M Enriched Clusters for BG3 Cells   Schema 
 
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 H3K4me2_07-030_M  GSE23469: H3K4me2_07-030_M Smoothed M-values for BG3 Cells   Schema 
 
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 H3K4me2_ab7766  GSE45063: H3K4me2_ab7766 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K4me2_ab7766  GSE45063: H3K4me2_ab7766 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K4me2_07-030_M  GSE23470: H3K4me2_07-030_M Enriched Clusters for S2 Cells   Schema 
 
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 H3K4me2_07-030_M  GSE23470: H3K4me2_07-030_M Smoothed M-values for S2 Cells   Schema 
 
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 H3K4me2_07-030_U  GSE20838: H3K4me2_07-030_U Enriched Clusters for S2 Cells   Schema 
 
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 H3K4me2_07-030_U  GSE20838: H3K4me2_07-030_U Smoothed M-values for S2 Cells   Schema 
 
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 H3K4me3_ab8580  GSE20839: H3K4me3_ab8580 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K4me3_ab8580  GSE20839: H3K4me3_ab8580 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K4me3_ab8580_lot1  GSE32827: H3K4me3_ab8580_lot1 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K4me3_ab8580_lot1  GSE32827: H3K4me3_ab8580_lot1 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K4me3_ab8580_lot2  GSE45088: H3K4me3_ab8580_lot2 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K4me3_ab8580_lot2  GSE45088: H3K4me3_ab8580_lot2 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K4me3_AR-0169-50  GSE20787: H3K4me3_AR-0169-50 Enriched Clusters for S2 Cells   Schema 
 
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 H3K4me3_AR-0169-50  GSE20787: H3K4me3_AR-0169-50 Smoothed M-values for S2 Cells   Schema 
 
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 H3K79me1_ab2886  GSE32736: H3K79me1_ab2886 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K79me1_ab2886  GSE32736: H3K79me1_ab2886 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K79me1_ab2886  GSE32828: H3K79me1_ab2886 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K79me1_ab2886  GSE32828: H3K79me1_ab2886 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K79me1_ab2886  GSE23473: H3K79me1_ab2886 Enriched Clusters for S2 Cells   Schema 
 
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 H3K79me1_ab2886  GSE23473: H3K79me1_ab2886 Smoothed M-values for S2 Cells   Schema 
 
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 H3K79me1_GSE20836  GSE20836: H3K79me1_GSE20836 Enriched Clusters for S2 Cells   Schema 
 
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 H3K79me1_GSE20836  GSE20836: H3K79me1_GSE20836 Smoothed M-values for S2 Cells   Schema 
 
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 H3K79me2  GSE20788: H3K79me2 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K79me2  GSE20788: H3K79me2 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K79me2  GSE32829: H3K79me2 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K79me2  GSE32829: H3K79me2 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K79me2  GSE20789: H3K79me2 Enriched Clusters for S2 Cells   Schema 
 
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 H3K79me2  GSE20789: H3K79me2 Smoothed M-values for S2 Cells   Schema 
 
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 H3K79me3_ab2621  GSE44525: H3K79me3_ab2621 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K79me3_ab2621  GSE44525: H3K79me3_ab2621 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K79me3_ab2621_lot1  GSE45062: H3K79me3_ab2621_lot1 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K79me3_ab2621_lot1  GSE45062: H3K79me3_ab2621_lot1 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K79me3_ab2621_lot1  GSE51967: H3K79me3_ab2621_lot1 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K79me3_ab2621_lot1  GSE51967: H3K79me3_ab2621_lot1 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K79me3_ab2621_lot1  GSE45090: H3K79me3_ab2621_lot1 Enriched Clusters for S2 Cells   Schema 
 
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 H3K79me3_ab2621_lot1  GSE45090: H3K79me3_ab2621_lot1 Smoothed M-values for S2 Cells   Schema 
 
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 H3K9ac  GSE32830: H3K9ac Enriched Clusters for BG3 Cells   Schema 
 
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 H3K9ac  GSE32830: H3K9ac Smoothed M-values for BG3 Cells   Schema 
 
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 H3K9ac  GSE27795: H3K9ac Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K9ac  GSE27795: H3K9ac Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K9ac  GSE20790: H3K9ac Enriched Clusters for S2 Cells   Schema 
 
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 H3K9ac  GSE20790: H3K9ac Smoothed M-values for S2 Cells   Schema 
 
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 H3K9acS10P  GSE23474: H3K9acS10P Enriched Clusters for BG3 Cells   Schema 
 
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 H3K9acS10P  GSE23474: H3K9acS10P Smoothed M-values for BG3 Cells   Schema 
 
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 H3K9acS10P  GSE25363: H3K9acS10P Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K9acS10P  GSE25363: H3K9acS10P Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K9acS10P  GSE23475: H3K9acS10P Enriched Clusters for S2 Cells   Schema 
 
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 H3K9acS10P  GSE23475: H3K9acS10P Smoothed M-values for S2 Cells   Schema 
 
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 H3K9me1_ab9045  GSE32831: H3K9me1_ab9045 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K9me1_ab9045  GSE32831: H3K9me1_ab9045 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K9me1_ab9045  GSE32832: H3K9me1_ab9045 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K9me1_ab9045  GSE32832: H3K9me1_ab9045 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K9me1_ab9045  GSE32833: H3K9me1_ab9045 Enriched Clusters for S2 Cells   Schema 
 
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 H3K9me1_ab9045  GSE32833: H3K9me1_ab9045 Smoothed M-values for S2 Cells   Schema 
 
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 H3K9me1_Diagenode  GSE44519: H3K9me1_Diagenode Enriched Clusters for S2 Cells   Schema 
 
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 H3K9me1_Diagenode  GSE44519: H3K9me1_Diagenode Smoothed M-values for S2 Cells   Schema 
 
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 H3K9me2_ab1220  GSE20791: H3K9me2_ab1220 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K9me2_ab1220  GSE20791: H3K9me2_ab1220 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K9me2_ab1220  GSE20821: H3K9me2_ab1220 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K9me2_ab1220  GSE20821: H3K9me2_ab1220 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K9me2_ab1220  GSE27741: H3K9me2_ab1220 Enriched Clusters for S2 Cells   Schema 
 
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 H3K9me2_ab1220  GSE27741: H3K9me2_ab1220 Smoothed M-values for S2 Cells   Schema 
 
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 H3K9me2_antibody2  GSE20792: H3K9me2_antibody2 Enriched Clusters for S2 Cells   Schema 
 
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 H3K9me2_antibody2  GSE20792: H3K9me2_antibody2 Smoothed M-values for S2 Cells   Schema 
 
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 H3K9me3_ab8898  GSE20793: H3K9me3_ab8898 Enriched Clusters for BG3 Cells   Schema 
 
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 H3K9me3_ab8898  GSE20793: H3K9me3_ab8898 Smoothed M-values for BG3 Cells   Schema 
 
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 H3K9me3_ab8898  GSE27796: H3K9me3_ab8898 Enriched Clusters for Kc167 Cells   Schema 
 
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 H3K9me3_ab8898  GSE27796: H3K9me3_ab8898 Smoothed M-values for Kc167 Cells   Schema 
 
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 H3K9me3_05-1242  GSE44520: H3K9me3_05-1242 Enriched Clusters for S2 Cells   Schema 
 
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 H3K9me3_05-1242  GSE44520: H3K9me3_05-1242 Smoothed M-values for S2 Cells   Schema 
 
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 H3K9me3_ab8898  GSE20794: H3K9me3_ab8898 Enriched Clusters for S2 Cells   Schema 
 
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 H3K9me3_ab8898  GSE20794: H3K9me3_ab8898 Smoothed M-values for S2 Cells   Schema 
 
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 H4  GSE32770: H4 Enriched Clusters for BG3 Cells   Schema 
 
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 H4  GSE32770: H4 Smoothed M-values for BG3 Cells   Schema 
 
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 H4  GSE32771: H4 Enriched Clusters for S2 Cells   Schema 
 
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 H4  GSE32771: H4 Smoothed M-values for S2 Cells   Schema 
 
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 H4acTetra  GSE20759: H4acTetra Enriched Clusters for S2 Cells   Schema 
 
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 H4acTetra  GSE20759: H4acTetra Smoothed M-values for S2 Cells   Schema 
 
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 H4K12ac  GSE45091: H4K12ac Enriched Clusters for S2 Cells   Schema 
 
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 H4K12ac  GSE45091: H4K12ac Smoothed M-values for S2 Cells   Schema 
 
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 H4K16ac_AR-0107  GSE20795: H4K16ac_AR-0107 Enriched Clusters for BG3 Cells   Schema 
 
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 H4K16ac_AR-0107  GSE20795: H4K16ac_AR-0107 Smoothed M-values for BG3 Cells   Schema 
 
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 H4K16ac_AR-0107  GSE20797: H4K16ac_AR-0107 Enriched Clusters for Kc167 Cells   Schema 
 
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 H4K16ac_AR-0107  GSE20797: H4K16ac_AR-0107 Smoothed M-values for Kc167 Cells   Schema 
 
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 H4K16ac_07-329  GSE20799: H4K16ac_07-329 Enriched Clusters for S2 Cells   Schema 
 
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 H4K16ac_07-329  GSE20799: H4K16ac_07-329 Smoothed M-values for S2 Cells   Schema 
 
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 H4K16ac_AR-0107  GSE20798: H4K16ac_AR-0107 Enriched Clusters for S2 Cells   Schema 
 
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 H4K16ac_AR-0107  GSE20798: H4K16ac_AR-0107 Smoothed M-values for S2 Cells   Schema 
 
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 H4K20me1  GSE32755: H4K20me1 Enriched Clusters for BG3 Cells   Schema 
 
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 H4K20me1  GSE32755: H4K20me1 Smoothed M-values for BG3 Cells   Schema 
 
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 H4K20me1  GSE32756: H4K20me1 Enriched Clusters for Kc167 Cells   Schema 
 
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 H4K20me1  GSE32756: H4K20me1 Smoothed M-values for Kc167 Cells   Schema 
 
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 H4K20me1  GSE27743: H4K20me1 Enriched Clusters for S2 Cells   Schema 
 
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 H4K20me1  GSE27743: H4K20me1 Smoothed M-values for S2 Cells   Schema 
 
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 H4K5ac  GSE20800: H4K5ac Enriched Clusters for S2 Cells   Schema 
 
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 H4K5ac  GSE20800: H4K5ac Smoothed M-values for S2 Cells   Schema 
 
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 H4K8ac  GSE45070: H4K8ac Enriched Clusters for BG3 Cells   Schema 
 
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 H4K8ac  GSE45070: H4K8ac Smoothed M-values for BG3 Cells   Schema 
 
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 H4K8ac  GSE32758: H4K8ac Enriched Clusters for Kc167 Cells   Schema 
 
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 H4K8ac  GSE32758: H4K8ac Smoothed M-values for Kc167 Cells   Schema 
 
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 H4K8ac  GSE20801: H4K8ac Enriched Clusters for S2 Cells   Schema 
 
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 H4K8ac  GSE20801: H4K8ac Smoothed M-values for S2 Cells   Schema 
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modENCODE ChIP-chip Sample Details

Description

These tracks show the ChIP-chip enrichment profiles for different histone modifications in BG3, Kc167, and S2 cell lines that were produced by the modENCODE project. The replicate set (repset) datasets were obtained from the NCBI BioProject database under the accession number PRJNA63463, and from the modENCODE data portal. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

modENCODE ChIP-chip Datasets

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References

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):480-5.

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