modENCODE PolII ChIP-Seq Track Settings
 
modENCODE RNA Polymerase II ChIP-Seq   (All ChIP Seq Tracks)

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 Configure 		 Embryos, 4-8 hr Peaks  modENCODE RNA PolII Peaks for 4-8 hr Embryos   Schema 
 
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 Configure 		 Embryos, 4-8 hr logLR  modENCODE RNA PolII Log Likelihood Enrichment for 4-8 hr Embryos   Schema 
 
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 Configure 		 Embryos, 8-12 hr Peaks  modENCODE RNA PolII Peaks for 8-12 hr Embryos   Schema 
 
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 Configure 		 Embryos, 8-12 hr logLR  modENCODE RNA PolII Log Likelihood Enrichment for 8-12 hr Embryos   Schema 
 
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 Configure 		 Embryos, 12-16 hr Peaks  modENCODE RNA PolII Peaks for 12-16 hr Embryos   Schema 
 
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 Configure 		 Embryos, 12-16 hr logLR  modENCODE RNA PolII Log Likelihood Enrichment for 12-16 hr Embryos   Schema 
 
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 Configure 		 Embryos, 16-20 hr Peaks  modENCODE RNA PolII Peaks for 16-20 hr Embryos   Schema 
 
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 Configure 		 Embryos, 16-20 hr logLR  modENCODE RNA PolII Log Likelihood Enrichment for 16-20 hr Embryos   Schema 
 
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 Configure 		 Embryos, 20-24 hr Peaks  modENCODE RNA PolII Peaks for 20-24 hr Embryos   Schema 
 
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 Configure 		 Embryos, 20-24 hr logLR  modENCODE RNA PolII Log Likelihood Enrichment for 20-24 hr Embryos   Schema 
 
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 Configure 		 L1 Peaks  modENCODE RNA PolII Peaks for L1 Stage Larvae   Schema 
 
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 Configure 		 L1 logLR  modENCODE RNA PolII Log Likelihood Enrichment for L1 Stage Larvae   Schema 
 
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 Configure 		 L2 Peaks  modENCODE RNA PolII Peaks for L2 Stage Larvae   Schema 
 
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 Configure 		 L2 logLR  modENCODE RNA PolII Log Likelihood Enrichment for L2 Stage Larvae   Schema 
 
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 Configure 		 L3 Peaks  modENCODE RNA PolII Peaks for L3 Stage Larvae   Schema 
 
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 Configure 		 L3 logLR  modENCODE RNA PolII Log Likelihood Enrichment for L3 Stage Larvae   Schema 
 
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 Configure 		 Pupae Peaks  modENCODE RNA PolII Peaks for Pupae   Schema 
 
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 Configure 		 Pupae logLR  modENCODE RNA PolII Log Likelihood Enrichment for Pupae   Schema 
    

Description

These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II ChIP-Seq reads at different developmental stages as determined by MACS2. The signal tracks correspond to the log likelihood enrichment ratios of the treatment versus the DNA input sample as determined by the bdgcmp program in MACS2.

The ChIP-Seq data were produced as part of the modENCODE project and were obtained from the NCBI Sequence Reads Archive under the accession number SRP001424.

Credits

Ho JW et al. ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis. BMC Genomics. 2011 Feb 28;12:134.

Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.