Subtracks⇓  Description⇓  modENCODE RNA-Seq (Cell Lines) Track Settings
 
modENCODE RNA-Seq for Different Cell Lines   (All RNA Seq Tracks)

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Track height: pixels (range: 11 to 110)
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Select subtracks by strand and cellline: (help)
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CellLine
ML-DmBG3-c2 
Kc167 
S2-DRSC 
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List subtracks: only selected/visible    all    (18 of 18 selected)  
 
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 ML-DmBG3-c2 - ENCSR286PNP (Plus)  RNA-seq for ML-DmBG3-c2 Cells - ENCSR286PNP (Plus)   Schema 
 
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 ML-DmBG3-c2 - ENCSR286PNP (Minus)  RNA-seq for ML-DmBG3-c2 Cells - ENCSR286PNP (Minus)   Schema 
 
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 ML-DmBG3-c2 - ENCSR359XXD (Plus)  RNA-seq for ML-DmBG3-c2 Cells - ENCSR359XXD (Plus)   Schema 
 
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 ML-DmBG3-c2 - ENCSR359XXD (Minus)  RNA-seq for ML-DmBG3-c2 Cells - ENCSR359XXD (Minus)   Schema 
 
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 ML-DmBG3-c2 - ENCSR792UNG (Plus)  RNA-seq for ML-DmBG3-c2 Cells - ENCSR792UNG (Plus)   Schema 
 
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 ML-DmBG3-c2 - ENCSR792UNG (Minus)  RNA-seq for ML-DmBG3-c2 Cells - ENCSR792UNG (Minus)   Schema 
 
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 ML-DmBG3-c2 - ENCSR792UNG (Plus)  RNA-seq for ML-DmBG3-c2 Cells - ENCSR792UNG (Plus)   Schema 
 
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 ML-DmBG3-c2 - ENCSR792UNG (Minus)  RNA-seq for ML-DmBG3-c2 Cells - ENCSR792UNG (Minus)   Schema 
 
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 ML-DmBG3-c2 - ENCSR934ILF (Plus)  RNA-seq for ML-DmBG3-c2 Cells - ENCSR934ILF (Plus)   Schema 
 
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 ML-DmBG3-c2 - ENCSR934ILF (Minus)  RNA-seq for ML-DmBG3-c2 Cells - ENCSR934ILF (Minus)   Schema 
 
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 Kc167 - ENCSR788YTN (Plus)  RNA-seq for Kc167 Cells - ENCSR788YTN (Plus)   Schema 
 
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 Kc167 - ENCSR788YTN (Minus)  RNA-seq for Kc167 Cells - ENCSR788YTN (Minus)   Schema 
 
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 Kc167 - ENCSR992GOY (Plus)  RNA-seq for Kc167 Cells - ENCSR992GOY (Plus)   Schema 
 
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 Kc167 - ENCSR992GOY (Minus)  RNA-seq for Kc167 Cells - ENCSR992GOY (Minus)   Schema 
 
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 S2-DRSC - ENCSR045CJI (Plus)  RNA-seq for S2-DRSC Cells - ENCSR045CJI (Plus)   Schema 
 
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 S2-DRSC - ENCSR045CJI (Minus)  RNA-seq for S2-DRSC Cells - ENCSR045CJI (Minus)   Schema 
 
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 S2R+ - ENCSR467UKU (Plus)  RNA-seq for S2R+ Cells - ENCSR467UKU (Plus)   Schema 
 
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 S2R+ - ENCSR467UKU (Minus)  RNA-seq for S2R+ Cells - ENCSR467UKU (Minus)   Schema 
    18 of 18 selected

Description

These tracks show the strand-specific RNA-Seq coverage for different D. melanogaster cell lines. The values in the coverage tracks correspond to the number of reads per million mapped reads (RPM) at each genomic position.

The RNA-Seq datasets were obtained from the ENCODE data portal at UCSC through the following accession numbers:

Track IDExperiment AccessionCell LineLibrary Extraction MethodBiological Replicate
ENCSR286PNP_1_BG3ENCSR286PNPML-DmBG3-c2Trizol1
ENCSR359XXD_1_BG3ENCSR359XXDML-DmBG3-c2RNeasy1
ENCSR792UNG_1_BG3ENCSR792UNGML-DmBG3-c2Trizol1
ENCSR792UNG_2_BG3ENCSR792UNGML-DmBG3-c2Trizol2
ENCSR934ILF_1_BG3ENCSR934ILFML-DmBG3-c2Trizol1
ENCSR788YTN_1_Kc167ENCSR788YTNKc167Trizol1
ENCSR992GOY_1_Kc167ENCSR992GOYKc167Trizol1
ENCSR045CJI_1_S2DRSCENCSR045CJIS2-DRSCRNeasy1
ENCSR467UKU_1_S2RENCSR467UKUS2R+RNeasy1

References

Brown JB, et al. Diversity and dynamics of the Drosophila transcriptome. Nature. 2014 Aug 28;512(7515):393-9.

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