modENCODE Cufflinks Transcripts Track Settings
 
D. kikkawai Cufflinks Transcripts from modENCODE RNA-Seq   (All RNA Seq Tracks)

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Description

This track was created by mapping D. kikkawai RNA-Seq reads (generated by the modENCODE project) against the D. kikkawai DkikGB2 assembly. The aligned RNA-Seq reads are then used as input for downstream analysis using Cufflinks. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the BioProject accession number PRJNA63469.

References

Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.

Trapnell C et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010 May;28(5):511-5.