Description
Genomic scaffolds from the D. mojavensis Comparative Analysis Freeze 1 (CAF1) assembly were
aligned against the improved D. mojavensis assembly produced by the Genomics Education Partnership
using LAST with default parameters. The alignments are then
chained and netted together using the
UCSC whole genome alignment protocol.
References
Chain/Net
Kent WJ, Baertsch R, Hinrichs A, Miller W, and Haussler D.
Evolution's cauldron: Duplication, deletion, and rearrangement
in the mouse and human genomes.
Proc Natl Acad Sci USA 2003 100(20): 11484-11489.
LAST
Kielbasa SM, Wan R, Sato K, Horton P, Frith MC.
Adaptive seeds tame genomic sequence comparison.
Genome Res. 2011 Mar;21(3):487-93.
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