Description
This track shows the exon junctions extracted from spliced RNA-Seq reads
that have been aligned to the genome. The splice junctions were
identified by the regtools
junctions extract subprogram.
The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the BioProject accession numbers
PRJNA264407 (ovarian follicle cells; Chirn GW et al., 2014) and
PRJNA414017 (adult males; Ma S et al., 2018).
The splice junction predictions from the different libraries are filtered
and merged together into a single set of predictions. The predictions are
color-coded based on the number of reads supporting the junction:
| Color | Number of reads |
|---|
| > 1000 |
| 500-999 |
| 100-499 |
| 50-99 |
| 10-49 |
| < 10 |
References
Ma S, Avanesov AS, Porter E, Lee BC, Mariotti M, Zemskaya N, Guigo R, Moskalev AA, Gladyshev VN.
Comparative transcriptomics across 14 Drosophila species reveals signatures of longevity.
Aging Cell. 2018 Apr 19:e12740.
Chirn GW, Rahman R, Sytnikova YA, Matts JA, Zeng M, Gerlach D, Yu M, Berger B, Naramura M, Kile BT, Lau NC.
Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals.
PLoS Genet. 2015 Nov 20;11(11):e1005652.
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