RNA-Seq Coverage Track Settings

D. pseudoobscura RNA-Seq Read Coverage (All RNA Seq Tracks)

Display mode: Reset to defaults

Type of graph:
Track height:	pixels (range: 11 to 110)
Data view scaling:	Always include zero:
Vertical viewing range:	min:	max: (range: 1 to 2e+06)
Transform function:	Transform data points by:
Windowing function:		Smoothing window:	pixels
Negate values:
Draw y indicator lines:	at y = 0.0: at y =

Graph configuration help

List subtracks: only selected/visible all
	full Configure	Adult Females	modENCODE RNA-Seq from Adult Females	Schema
	full Configure	Adult Males	modENCODE RNA-Seq from Adult Males	Schema

Description

This track was created by mapping D. pseudoobscura RNA-Seq reads (generated by the modENCODE project) against the D. pseudoobscura DpseGB3 assembly using HISAT2. The RNA-Seq read coverage tracks were produced by the genomecov subprogram in bedtools. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the accession number SRP006203.

References

Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements Nat Methods. 2015 Apr;12(4):357-60.

Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010 Mar 15;26(6):841-2.