RNA-Seq Coverage Track Settings

D. serrata RNA-Seq Read Coverage (All RNA Seq Tracks)

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Type of graph:
Track height:	pixels (range: 11 to 110)
Data view scaling:	Always include zero:
Vertical viewing range:	min:	max: (range: 1 to 2e+06)
Transform function:	Transform data points by:
Windowing function:		Smoothing window:	pixels
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	full Configure	Adult Females	RNA-Seq from Adult Females	Schema
	full Configure	Adult Males	RNA-Seq from Adult Males	Schema

Description

This track was created by mapping D. serrata RNA-Seq reads against the D. serrata DserGB1 assembly using HISAT2. The RNA-Seq read coverage tracks were produced by the genomecov subprogram in bedtools. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the accession number SRP096263.

References

Allen SL, Delaney EK, Kopp A, Chenoweth SF. Single-Molecule Sequencing of the Drosophila serrata Genome. G3 (Bethesda). 2017 Mar 10;7(3):781-788.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements Nat Methods. 2015 Apr;12(4):357-60.

Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010 Mar 15;26(6):841-2.