Description
This track was created by mapping D. suzukii RNA-Seq reads (generated by
the Spotted Wing Drosophila Genome Project)
against the D. suzukii DsuzGB1 assembly using Bowtie2 and TopHat. The
RNA-Seq data were obtained from the NCBI Sequence Read Archive under the BioProject accession number
PRJNA221549.
The TopHat junction predictions from the different libraries are filtered
and merged together into a single set of predictions. The predictions are
color-coded based on the number of reads supporting the junction:
Color | Number of reads |
| > 1000 |
| 500-999 |
| 100-499 |
| 50-99 |
| 10-49 |
| < 10 |
References
Chiu JC et al.
Genome of Drosophila suzukii, the spotted wing drosophila.
G3 (Bethesda). 2013 Dec 9;3(12):2257-71.
Trapnell C, Pachter L, Salzberg SL.
TopHat: discovering splice junctions with RNA-Seq.
Bioinformatics. 2009 May 1;25(9):1105-11.
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