Pfam Conserved Domains Track Settings

Similarity to Pfam Conserved Domains Identified by RPS-BLAST (All Genes and Gene Prediction Tracks)

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Filter items in 'Name of conserved domain' field: using

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Data last updated at UCSC: 2022-08-16 13:07:17

Description

This track shows the locations in the D. kikkawai (DkikHiC1) assembly with sequence similarity to conserved domains in the Pfam database. The regions of similarity were identified using RPS-BLAST, and then filtered by the rpsbproc program.

The color of each feature corresponds to its normalized bit score. The warmer colors corresponds to more significant hits:

Color	Bit scores
	> 500
	200-500
	80-200
	50-80
	40-50
	< 40

References

Yang M, Derbyshire MK, Yamashita RA, Marchler-Bauer A. NCBI's Conserved Domain Database and Tools for Protein Domain Analysis. Curr Protoc Bioinformatics. 2020 Mar;69(1):e90. doi: 10.1002/cpbi.90.

Mistry J, Chuguransky S, Williams L, Qureshi M, Salazar GA, Sonnhammer ELL, Tosatto SCE, Paladin L, Raj S, Richardson LJ, Finn RD, Bateman A. Pfam: The protein families database in 2021. Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419. doi: 10.1093/nar/gkaa913.