SNAP Genes (BUSCO) Track Settings

SNAP Gene Predictions with BUSCO Training Set (All Gene Predictions (Species-specific Parameters) tracks)

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Data last updated at UCSC: 2022-10-20

Description

This track shows the gene predictions from the SNAP gene finder using the species-specific parameters estimated from a training set produced by BUSCO.

Methods

The training set used to estimate the species-specific parameters for the SNAP analysis was produced by BUSCO using the arthropoda_odb9 dataset.

References

Korf I. Gene finding in novel genomes. BMC Bioinformatics. 2004 May 14;5:59.

Simão FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics. 2015 Oct 1;31(19):3210-2.