Description

Drosophila melanogaster proteins annotated by FlyBase were aligned against the D. kikkawai (DkikHiC1) genome assembly using Spaln2. The Spaln2 alignments were generated using cross-species parameters optimized for D. melanogaster (-yX1 -TInsectDm -LS -ya0 -yS100).

References

Iwata H, Gotoh O. Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features. Nucleic Acids Res. 2012 Nov 1;40(20):e161.