TE Density Track Settings

RepeatMasker Transposon Density (1kb window, 100bp step size) (All Variation and Repeats tracks)

Display mode:

Type of graph:
Track height:	pixels (range: 11 to 110)
Data view scaling:	Always include zero:
Vertical viewing range:	min:	max: (range: 0 to 1)
Transform function:	Transform data points by:
Windowing function:		Smoothing window:	pixels
Negate values:
Draw y indicator lines:	at y = 0.0: at y =

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Data last updated at UCSC: 2015-03-13 17:47:20

Description

This track shows the density of transposon fragments identified by RepeatMasker in a 1kb sliding window (100bp step size) using the RepBase Drosophila library.

References

Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0. http://www.repeatmasker.org. 1996-2010.

Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 2005;110(1-4):462-7.