Combined CSHL RAMPAGE TSS Track Settings
 
Combined CSHL RAMPAGE Transcription Start Sites   (All Expression and Regulation tracks)

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 Configure 		 RAMPAGE Peaks  TSS Identified by Combined Adult Females and Embryos RAMPAGE Results   Schema 
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 Configure 		 Adult Females RAMPAGE Peaks  TSS Identified by Combined Adult Females RAMPAGE Results   Schema 
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 Configure 		 Embryos RAMPAGE Peaks  TSS Identified by Combined Embryos RAMPAGE Results   Schema 
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 Configure 		 Embryos RAMPAGE (Plus)  Combined RAMPAGE Read Density for Embryos (Plus)   Schema 
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Description

These tracks show the locations of putative Transcription Start Sites (TSS) in the D. kikkawai genome based on the analysis of RAMPAGE results from D. kikkawai mixed embryos and adult females samples. The RAMPAGE reads were mapped against the D. kikkawai (DkikHiC1) assembly using STAR. The putative promoter regions were identified by TSRchitect.

Credits

The RAMPAGE data were produced by the Gingeras Lab at the Cold Spring Harbor Laboratory.

References

Batut PJ, Gingeras TR. Conserved noncoding transcription and core promoter regulatory code in early Drosophila development. Elife. 2017 Dec 20;6.

Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013 Jan 1;29(1):15-21.