Combined RAMPAGE TSS Track Settings

Combined RAMPAGE Transcription Start Sites (All Expression and Regulation tracks)

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Description

This track shows the locations of putative Transcription Start Sites (TSS) in the D. pseudoobscura genome based on the analysis of RAMPAGE results from multiple stages of Drosophila embryos.

The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE89300. The results were lifted from the D. pseudoobscura release 2 assembly to the release 3 assembly.

References

Batut PJ, Gingeras TR. Conserved noncoding transcription and core promoter regulatory code in early Drosophila development. Elife. 2017 Dec 20;6.

Batut P, Dobin A, Plessy C, Carninci P, Gingeras TR. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Res. 2013 Jan;23(1):169-80.