Subtracks⇓  Description⇓  TSRchitect RAMPAGE TSS Read Density (Replicate 2) Track Settings
 
TSRchitect RAMPAGE Read Density for Different Developmental Stages (Replicate 2)   (All Updated Transcriptome Tracks)

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Track height: pixels (range: 11 to 110)
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Windowing function: Smoothing window:  pixels
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Draw y indicator lines:at y = 0.0:    at y =
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 Embryos, 1 hr (Plus)  RAMPAGE Read Density for 1 hr Embryo (Plus)   Schema 
 
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 Embryos, 1 hr (Minus)  RAMPAGE Read Density for 1 hr Embryo (Minus)   Schema 
 
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 Embryos, 2 hr (Plus)  RAMPAGE Read Density for 2 hr Embryo (Plus)   Schema 
 
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 Embryos, 2 hr (Minus)  RAMPAGE Read Density for 2 hr Embryo (Minus)   Schema 
 
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 Embryos, 3 hr (Plus)  RAMPAGE Read Density for 3 hr Embryo (Plus)   Schema 
 
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 Embryos, 3 hr (Minus)  RAMPAGE Read Density for 3 hr Embryo (Minus)   Schema 
 
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 Embryos, 4 hr (Plus)  RAMPAGE Read Density for 4 hr Embryo (Plus)   Schema 
 
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 Embryos, 4 hr (Minus)  RAMPAGE Read Density for 4 hr Embryo (Minus)   Schema 
 
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 Embryos, 5 hr (Plus)  RAMPAGE Read Density for 5 hr Embryo (Plus)   Schema 
 
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 Embryos, 5 hr (Minus)  RAMPAGE Read Density for 5 hr Embryo (Minus)   Schema 
 
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 Embryos, 6 hr (Plus)  RAMPAGE Read Density for 6 hr Embryo (Plus)   Schema 
 
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 Embryos, 6 hr (Minus)  RAMPAGE Read Density for 6 hr Embryo (Minus)   Schema 
 
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 Embryos, 7 hr (Plus)  RAMPAGE Read Density for 7 hr Embryo (Plus)   Schema 
 
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 Embryos, 7 hr (Minus)  RAMPAGE Read Density for 7 hr Embryo (Minus)   Schema 
 
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 Embryos, 8 hr (Plus)  RAMPAGE Read Density for 8 hr Embryo (Plus)   Schema 
 
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 Embryos, 8 hr (Minus)  RAMPAGE Read Density for 8 hr Embryo (Minus)   Schema 
 
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 Embryos, 9 hr (Plus)  RAMPAGE Read Density for 9 hr Embryo (Plus)   Schema 
 
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 Embryos, 9 hr (Minus)  RAMPAGE Read Density for 9 hr Embryo (Minus)   Schema 
 
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 Embryos, 10 hr (Plus)  RAMPAGE Read Density for 10 hr Embryo (Plus)   Schema 
 
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 Embryos, 10 hr (Minus)  RAMPAGE Read Density for 10 hr Embryo (Minus)   Schema 
 
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 Embryos, 11 hr (Plus)  RAMPAGE Read Density for 11 hr Embryo (Plus)   Schema 
 
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 Embryos, 11 hr (Minus)  RAMPAGE Read Density for 11 hr Embryo (Minus)   Schema 
 
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 Embryos, 12 hr (Plus)  RAMPAGE Read Density for 12 hr Embryo (Plus)   Schema 
 
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 Embryos, 12 hr (Minus)  RAMPAGE Read Density for 12 hr Embryo (Minus)   Schema 
 
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 Embryos, 13 hr (Plus)  RAMPAGE Read Density for 13 hr Embryo (Plus)   Schema 
 
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 Embryos, 13 hr (Minus)  RAMPAGE Read Density for 13 hr Embryo (Minus)   Schema 
 
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 Embryos, 14 hr (Plus)  RAMPAGE Read Density for 14 hr Embryo (Plus)   Schema 
 
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 Embryos, 14 hr (Minus)  RAMPAGE Read Density for 14 hr Embryo (Minus)   Schema 
 
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 Embryos, 15 hr (Plus)  RAMPAGE Read Density for 15 hr Embryo (Plus)   Schema 
 
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 Embryos, 15 hr (Minus)  RAMPAGE Read Density for 15 hr Embryo (Minus)   Schema 
 
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 Embryos, 16 hr (Plus)  RAMPAGE Read Density for 16 hr Embryo (Plus)   Schema 
 
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 Embryos, 16 hr (Minus)  RAMPAGE Read Density for 16 hr Embryo (Minus)   Schema 
 
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 Embryos, 17 hr (Plus)  RAMPAGE Read Density for 17 hr Embryo (Plus)   Schema 
 
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 Embryos, 17 hr (Minus)  RAMPAGE Read Density for 17 hr Embryo (Minus)   Schema 
 
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 Embryos, 18 hr (Plus)  RAMPAGE Read Density for 18 hr Embryo (Plus)   Schema 
 
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 Embryos, 18 hr (Minus)  RAMPAGE Read Density for 18 hr Embryo (Minus)   Schema 
 
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 Embryos, 19 hr (Plus)  RAMPAGE Read Density for 19 hr Embryo (Plus)   Schema 
 
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 Embryos, 19 hr (Minus)  RAMPAGE Read Density for 19 hr Embryo (Minus)   Schema 
 
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 Embryos, 20 hr (Plus)  RAMPAGE Read Density for 20 hr Embryo (Plus)   Schema 
 
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 Embryos, 20 hr (Minus)  RAMPAGE Read Density for 20 hr Embryo (Minus)   Schema 
 
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 Embryos, 21 hr (Plus)  RAMPAGE Read Density for 21 hr Embryo (Plus)   Schema 
 
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 Embryos, 21 hr (Minus)  RAMPAGE Read Density for 21 hr Embryo (Minus)   Schema 
 
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 Embryos, 22 hr (Plus)  RAMPAGE Read Density for 22 hr Embryo (Plus)   Schema 
 
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 Embryos, 22 hr (Minus)  RAMPAGE Read Density for 22 hr Embryo (Minus)   Schema 
 
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 Embryos, 23 hr (Plus)  RAMPAGE Read Density for 23 hr Embryo (Plus)   Schema 
 
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 Embryos, 23 hr (Minus)  RAMPAGE Read Density for 23 hr Embryo (Minus)   Schema 
    46 of 46 selected

Description

These tracks show the density of RAMPAGE reads from different developmental stages of D. melanogaster embryos.

The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE89299. The RAMPAGE reads were mapped against the D. melanogaster (dm6) assembly using STAR.

References

Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013 Jan 1;29(1):15-21.

Batut PJ, Gingeras TR. Conserved noncoding transcription and core promoter regulatory code in early Drosophila development. Elife. 2017 Dec 20;6.

Batut P, Dobin A, Plessy C, Carninci P, Gingeras TR. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Res. 2013 Jan;23(1):169-80.

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