TSRchitect Combined RAMPAGE TSS Track Settings

TSRchitect Combined RAMPAGE Transcription Start Sites (All Expression and Regulation tracks)

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	hide	TSRchitect RAMPAGE Peaks	TSRchitect TSS Identified by Combined RAMPAGE Results	Schema
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Description

This track shows the locations of putative Transcription Start Sites (TSS) in the D. pseudoobscura genome based on the analysis of RAMPAGE results from multiple developmental stages of D. pseudoobscura embryos.

The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE89300. The RAMPAGE reads were mapped against the D. pseudoobscura (DpseGB3) assembly using STAR. The putative promoter regions were identified by TSRchitect.

References

Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013 Jan 1;29(1):15-21.

Batut PJ, Gingeras TR. Conserved noncoding transcription and core promoter regulatory code in early Drosophila development. Elife. 2017 Dec 20;6.