Eye Discs ATAC-Seq Track Settings

ATAC-Seq of D. erecta Eye Discs (All Expression and Regulation tracks)

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Log Likelihood Configuration

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3rd Instar

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	hide	Eye Discs IDR	IDR Peaks for D. erecta Eye-antennal Discs	Schema
	hide	Eye Discs MACS	MACS2 Peaks for D. erecta Eye-antennal Discs	Schema
	hide	Eye Discs logLR	Log Likelihood Enrichment for D. erecta Eye-antennal Discs	Schema

Description

These tracks show the results from Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq) of D. erecta eye-antennal discs from 3rd instar larvae. The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05.

The datasets were obtained from the NCBI BioProject database under the accession number PRJNA397749.

References

Jacobs J, Atkins M, Davie K, Imrichova H, Romanelli L, Christiaens V, Hulselmans G, Potier D, Wouters J, Taskiran II, Paciello G, González-Blas CB, Koldere D, Aibar S, Halder G, Aerts S. The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes. Nat Genet. 2018 Jul;50(7):1011-1020.

Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.