Potential frame-shifts identified by Spaln2 when aligning D. melanogaster
proteins against the D. erecta genome assembly with cross-species parameters.
D. melanogaster proteins were mapped against the D. erecta
genome assembly with tblastn. For each protein, the region surrounding
the best tblastn hit is identified and each protein is re-aligned against this
genomic region with Spaln2 using cross-species parameters optimized for
D. melanogaster: (-Tdromel -yX).
Iwata H., and Gotoh, O.
Benchmarking spliced alignment programs including Spaln2,
an extended version of Spaln that incorporates additional species-specific features.
Nucleic Acids Research. 2012, 109