Splice Junctions Track Settings
Splice Junctions Predicted by regtools using D. simulans RNA-Seq   (All RNA Seq Tracks)

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Show only items with score at or above:   (range: 0 to 1000)

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Data last updated at UCSC: 2022-10-20


This track shows the exon junctions extracted from spliced RNA-Seq reads that have been aligned to the genome. The splice junctions were identified by the regtools junctions extract subprogram. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the accession number SRP006203.

The splice junction predictions from the different libraries are filtered and merged together into a single set of predictions. The predictions are color-coded based on the number of reads supporting the junction:

ColorNumber of reads
> 1000
< 10


Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.