D. erecta DereCAF1 scaffold_4512:1,233,032-1,278,977 UCSC Genome Browser v435

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC Genome Browser on D. erecta May 2011 (Agencourt dere_caf1/DereCAF1)
move zoom in zoom out

scaffold_4512:1,233,032-1,278,977 45,946 bp.

move start

Click on a feature for details. Click+shift+drag to zoom in. Click side bars for track options. Drag side bars or labels up or down to reorder tracks. Drag tracks left or right to new position. Press "?" for keyboard shortcuts.

move end

Use drop-down controls below and press refresh to alter tracks displayed.
Tracks with lots of items will automatically be displayed in more compact modes.

Mapping and Sequencing Tracks

Gap

INSDC

Genes and Gene Prediction Tracks

Drosophila RefSeq Transcripts

Potential Frame Shifts

SNAP

Gene Predictions (Species-specific Parameters)

Augustus Genes (BUSCO)

Geneid Genes (BUSCO)

SNAP Genes (BUSCO)

GlimmerHMM Genes (BUSCO)

Expression and Regulation

Combined RAMPAGE TSS

RAMPAGE TSS Read Density

TSRchitect Combined RAMPAGE TSS

TSRchitect RAMPAGE TSS Read Density

Eye Discs ATAC-Seq

RNA Seq Tracks

RNA-Seq Coverage

Splice Junctions

TransDecoder Transcripts

Comparative Genomics

Drosophila Chain/Net

D. erecta (DereRS2) Chain

D. erecta (DereRS2) Net

Variation and Repeats

tantan

LTRharvest

left 10%	ctrl+j	track search	t then s
left 1/2 screen	j	default tracks	d then t
left one screen	J	default order	d then o
right 10%	ctrl+l	hide all	h then a
right 1/2 screen	l	custom tracks	c then t
right one screen	L	track collections	t then c
jump to position box	/	track hubs	t then h
zoom in 1.5x	ctrl+i	configure	c then f
zoom in 3x	i	reverse	r then v
zoom in 10x	I	resize	r then s
zoom in base level	b	refresh	r then f
zoom out 1.5x	ctrl+k	view chrom names	v then s
zoom out 3x	k	send to external tool	s then t
zoom out 10x	K	exon view	e then v
zoom out 100x	0	default view	d then v
zoom to ...		view DNA	v then d
50bp (1 zero)	1	Reset all User Settings	c then r
500bp (2 zeros)	2	Tools - BLAT	t then b
5000bp (3 zeros)	3	Tools - Table Browser	t then t
50kbp (4 zeros)	4	Tools - PCR	t then i
500kbp (5 zeros)	5	My Sessions	s then s
5Mbp (6 zeros)	6	Public Sessions	p then s
Highlight all (mark)	h then m	Clear all Highlights	h then c