UCSC Genome Browser on D. mojavensis Sep. 2021 (Stanford ASM1815372v1/DmojRefSeq2)
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NW_025318684:467,500-470,000 2,501 bp.
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-   Mapping and Sequencing Tracks
Base Position
Gap
GC Percent
Assembly
CpG Islands
INSDC
RefSeq Acc
Restr Enzymes
Short Match
-   Genes and Gene Prediction Tracks
RefSeq Genes
D. mel Transcripts
D. mel Proteins
genBlastG Genes
GeMoMa Genes
Drosophila RefSeq Transcripts
Potential Frame Shifts
CDS Mapping
Genscan Genes
Geneid Genes
N-SCAN
N-SCAN PASA-EST
Augustus
Augustus (Protein Hints)
GlimmerHMM
tRNA Genes
rRNA Genes
Pfam Conserved Domains
-   Expression and Regulation
Eye Discs ATAC-Seq
-   RNA-Seq Tracks
Combined Splice Junctions
Aggregated RNA-Seq Coverage
RNA-Seq Coverage (Stages)
RNA-Seq Coverage (Tissues)
TransDecoder Transcripts
Trinity Transcripts
-   PacBio Iso-Seq Tracks
FLNC Iso-Seq Reads
Clustered Iso-Seq Reads
Collapsed Iso-Seq Transcripts
SQANTI3 QC Transcripts
SQANTI3 Filtered Transcripts
uLTRA FLNC Iso-Seq Reads
uLTRA Collapsed Iso-Seq Transcripts
TAMA Collapsed Transcripts
StringTie2 Iso-Seq Transcripts
Scallop-LR Iso-Seq Transcripts
TransDecoder Iso-Seq Transcripts
-   PacBio Iso-Seq Tracks (Adults)
FLNC Iso-Seq Reads (Adults)
Clustered Iso-Seq Reads (Adults)
Collapsed Iso-Seq Transcripts (Adults)
SQANTI3 QC Transcripts (Adults)
SQANTI3 Filtered Transcripts (Adults)
uLTRA FLNC Iso-Seq Reads (Adults)
uLTRA Collapsed Iso-Seq Transcripts (Adults)
TAMA Collapsed Transcripts (Adults)
StringTie2 Iso-Seq Transcripts (Adults)
Scallop-LR Iso-Seq Transcripts (Adults)
TransDecoder Iso-Seq Transcripts (Adults)
-   PacBio Iso-Seq Tracks (Embryos)
FLNC Iso-Seq Reads (Embryos)
Clustered Iso-Seq Reads (Embryos)
Collapsed Iso-Seq Transcripts (Embryos)
SQANTI3 QC Transcripts (Embryos)
SQANTI3 Filtered Transcripts (Embryos)
uLTRA FLNC Iso-Seq Reads (Embryos)
uLTRA Collapsed Iso-Seq Transcripts (Embryos)
TAMA Collapsed Transcripts (Embryos)
StringTie2 Iso-Seq Transcripts (Embryos)
Scallop-LR Iso-Seq Transcripts (Embryos)
TransDecoder Iso-Seq Transcripts (Embryos)
-   Comparative Genomics
D. melanogaster Chain
D. melanogaster Net
D. mojavensis DmojCAF1 Chain
D. mojavensis DmojCAF1 Net
-   Variation and Repeats
Interrupted Rpts
Microsatellite
Simple Repeats
WM + SDust
RepeatMasker
TE Density
TANTAN
TANTAN Tandem
RepeatModeler
TransposonPSI (Pfam)
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