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Base Position
| Chromosome Band
| Gap
| GC Percent
| Assembly
| INSDC
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RefSeq Acc
| Restr Enzymes
| Short Match
| Melting Temp.
| RNASlider MFE
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1M-8M Screens (R5)
| 9M Screen (R5)
| GAA Screen
| Chr4 Constructs
| Landing Pad Lines (R5)
| MiMIC Lines
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Het. Domains (R5)
| BG3 9-state (R5)
| S2 9-state (R5)
| BG3 30-state (R5)
| S2 30-state (R5)
| Kc 5-state (R5)
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hiHMM Models (R5)
| S2 Zhou 30-state (R5)
| LAD (R5)
| Hi-C Domains (Embryos) (R5)
| Topological Boundaries (R5)
| TAD Boundaries (Nuc. Cycle 14)
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HiCseg Domains (Kc167) (R5)
| MARs (Embryos)
| Polytene TADs (R5)
| GCSDI Models (R5)
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FlyBase Genes
| FlyBase Exons
| FlyBase CDS
| FlyBase Pseudogenes
| FlyBase Non-coding
| Drosophila RefSeq Transcripts
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piRNA Clusters (R5)
| Pfam in RefSeq
| UniProt
| FlyBase 6.06 Genes
| FlyBase 6.06 Proteins
| FlyBase 6.06 Exons
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FlyBase 6.06 CDS
| FlyBase 6.06 Pseudogenes
| FlyBase 6.06 Non-coding
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Phantom Peaks (R5)
| modENCODE Histones ChIP-Seq
| PePr Histone Modifications Peaks
| MUSIC Histone Modifications Peaks
| Genome Mappability
| modENCODE PolII ChIP-Seq
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MUSIC PolII ChIP-Seq Peaks
| PolII ChIP-Seq (Cell Lines)
| RNA PolII X-ChIP-Seq
| Inhibit Topoisomerases PolII ChIP-Seq
| Basal Transcription Factors ChIP-Seq
| GAF KD Differential Regions
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Basal Transcription Factors ChIP-exo
| ORGANIC Enrichment (S2 Cells)
| Architectural Proteins ChIP-Seq (Kc167)
| Architectural Proteins ChIP-Seq (S2)
| Heat Shock Proteins ChIP-Seq (S2)
| TF ChIP-nexus
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ChIP-Seq MBT Embryos
| CLAMP ChIP-Seq
| Henriques 2018 ChIP-Seq
| Zelda ChIP-Seq
| Su(H) ChIP-Seq
| Histone Variants ChIP-Seq (S2)
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R-Loop DRIP-Seq (S2)
| modENCODE Histone Modifications (R5)
| modENCODE Chromosomal Proteins (R5)
| modERN TF Peaks
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Unique ChIP-chip Probes
| Pausing Factors ChIP-chip (S2 Cells)
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wAna Alignments
| wRi Alignments
| wMel Alignments
| Wolbachia Proteins
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Detected DHS Positions (Cell Lines) (R5)
| DHS Read Density (Cell Lines) (R5)
| Detected DHS Positions (Embryos)
| DHS Read Density (Embryos)
| MACS2 DHS
| TSS (Embryonic) (R5)
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TSS (Celniker) (R5)
| Combined modENCODE CAGE TSS
| modENCODE CAGE Tag Clusters
| modENCODE CAGE Read Density
| Combined RAMPAGE TSS (R5)
| RAMPAGE TSS Read Density (R5)
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Combined RAMPAGE TSS (Replicate 2) (R5)
| RAMPAGE TSS Read Density (Replicate 2) (R5)
| Combined MachiBase TSS
| MachiBase TSS Read Density
| Combined Exo-seq TSS
| Exo-seq Read Density
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Exo-seq Tag Clusters
| MACE TSS
| Exosome RNAi CAGE
| Exosome RNAi CAGE Tag Clusters
| PEAT (S2 Cells)
| TES (Celniker) (R5)
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TFBS HOT Spots (R5)
| MACS STARR-seq Peaks
| MACS STARR-seq Enrichment
| MUSIC STARR-seq Peaks
| MUSIC STARR-seq Enrichment
| PePr STARR-seq Peaks
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hkCP dCP STARR-Seq
| Enhancers (R5)
| Silencers (R5)
| Insulators (R5)
| Origins of Replication (R5)
| SNS Origins of Replication (R5)
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EPDnew Promoters
| Schor 2017 CAGE Peaks (R5)
| REDfly Regulatory Elements
| CORE Promoters
| GRO-Seq (R5)
| Core LJ 2012 GRO-Seq (R5)
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PRO-seq (R5)
| Schaaf CA 2013 BG3 PRO-seq
| Duarte FM 2016 PRO-seq
| FStitch Nascent Transcripts
| 3'NT (S2 Cells)
| CapSeq Tag Clusters
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CapSeq Read Density
| Start-Seq TSS (Larvae) (R5)
| scRNAs (S2 Cells)
| Permanganate ChIP-Seq (R5)
| Embryos FAIRE-Seq
| Schulz FAIRE-Seq
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Embryos ATAC-Seq
| 3rd Instar Larvae ATAC-Seq
| Eye Discs ATAC-Seq
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MNase Accessibility (R5)
| GAF RNAi MNase
| GAF vs. LacZ RNAi MNase
| NELF RNAi MNase
| NELF RNAi vs. Mock MNase
| MBT Embryos MNase
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FlyBase Exon Junctions
| Combined modENCODE RNA-Seq (Development) (R5)
| modENCODE RNA-Seq (Development) (R5)
| modENCODE RNA-Seq (Cell Lines)
| Aggregated RNA-Seq Coverage
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Drosophila Conservation (36 Species)
| RefSeq Drosophila Chain/Net
| Drosophila Conservation (28 Species)
| Drosophila Conservation (26 Species)
| PhyloP (14 Species)
| PhastCons (14 Species)
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Conservation (14 Species)
| Drosophila Chain/Net
| (dm3) D. mel. Chain
| (dm3) D. mel. Net
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Variants in lacO Mutants (All)
| Variants in lacO Mutants (Filtered)
| UniProt Variants
| dbSNP
| dbVar
| DGRP v2 (R5)
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DGRP TE Insertions (ngs_te_mapper) (R5)
| DGRP TE Insertions (TEMP)
| FlyVar EMS Screen
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Natural TE
| Interrupted Rpts
| Microsatellite
| Simple Repeats
| WM + SDust
| RepeatMasker
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TE Density
| Combined Library
| TransposonPSI
| TANTAN
| Tallymer
| RepeatDetector
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Inverted Repeats
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Combined modENCODE RNA-Seq (Development)
| Combined Splice Junctions (Development)
| modENCODE RNA-Seq (Development)
| Combined modENCODE RNA-Seq (Tissues)
| Combined Splice Junctions (Tissues)
| modENCODE RNA-Seq (Tissues)
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Combined modENCODE RNA-Seq (Cell Lines)
| Combined Splice Junctions (Cell Lines)
| modENCODE RNA-Seq (Cell Lines)
| Combined RAMPAGE Embryos TSS
| TSRchitect RAMPAGE Embryos TSS
| TSRchitect Combined RAMPAGE TSS (Replicate 1)
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TSRchitect RAMPAGE TSS Read Density (Replicate 1)
| TSRchitect Combined RAMPAGE TSS (Replicate 2)
| TSRchitect RAMPAGE TSS Read Density (Replicate 2)
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