Control track and group visibility more selectively below.
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| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| Gap |
| Gap Locations |
| GC Percent |
| GC Percent in 5-Base Windows |
| Assembly |
| Assembly from Fragments |
| INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
| RefSeq Acc |
| RefSeq Accession |
| Restr Enzymes |
| Restriction Enzymes from REBASE |
| Short Match |
| Perfect Matches to Short Sequence () |
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| RefSeq Genes |
| BLAT Alignments of NCBI RefSeq Genes |
| MAKER Predictions |
| MAKER Gene Predictions Produced by BCM |
| D. mel Transcripts |
| BLAT Alignment of D. melanogaster Transcripts |
| D. mel Proteins |
| Spaln Alignment of D. melanogaster Proteins |
| genBlastG Genes |
| genBlastG Gene Predictions |
| GeMoMa Genes |
| GeMoMa Gene Predictions |
| Drosophila RefSeq Transcripts |
| BLAT Alignment of Drosophila RefSeq Transcripts |
| Potential Frame Shifts |
| Potential Frame Shifts Detected by SPALN2 |
| CDS Mapping |
| TBLASTN Mapping of D. melanogaster CDS |
| Genscan Genes |
| Genscan Gene Predictions |
| Geneid Genes |
| Geneid Gene Predictions |
| N-SCAN |
| N-SCAN Gene Predictions |
| N-SCAN PASA-EST |
| N-SCAN PASA-EST Gene Predictions |
| Augustus |
| Augustus Gene Predictions |
| SNAP |
| SNAP Gene Predictions |
| GlimmerHMM |
| GlimmerHMM Gene Predictions |
| tRNA Genes |
| Transfer RNA Genes Identified by tRNAscan-SE 2.0 |
| rRNA Genes |
| Ribosomal RNA Genes Identified by RNAmmer |
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| modENCODE RNA-Seq Coverage |
| modENCODE D. kikkawai RNA-Seq Coverage |
| modENCODE TopHat Junctions |
| D. kikkawai TopHat Splice Junctions from modENCODE RNA-Seq |
| modENCODE Cufflinks Transcripts |
| D. kikkawai Cufflinks Transcripts from modENCODE RNA-Seq |
| modENCODE TransDecoder Transcripts |
| D. kikkawai TransDecoder Transcripts from modENCODE RNA-Seq |
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| Drosophila Chain/Net |
| Drosophila Genomes, Chain and Net Alignments |
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| Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
| Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
| Simple Repeats |
| Simple Tandem Repeats by TRF |
| WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
| RepeatMasker |
| Repeating Elements by RepeatMasker |
| TE Density |
| RepeatMasker Transposon Density (1kb window, 100bp step size) |
| tantan |
| Simple Repeats Identified by tantan |
| Tallymer |
| Repetitive Regions Identified by Tallymer |
| RepeatModeler |
| Transposons Identified by RepeatModeler |
| TransposonPSI (Pfam) |
| Pfam Transposon Protein Domains Identified by TransposonPSI |
| LTRharvest |
| LTR Fragments Identified by LTRharvest |
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