D. melanogaster dm6 chr4:307,000-312,000 UCSC Genome Browser v435

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UCSC Genome Browser on D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6)
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chr4:307,000-312,000 5,001 bp.

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Mapping and Sequencing Tracks

Chromosome Band

Transgenic Insertions

Chromatin Domains

Het. Domains (R5)

BG3 9-state (R5)

S2 9-state (R5)

BG3 30-state (R5)

S2 30-state (R5)

Kc 5-state (R5)

hiHMM Models (R5)

S2 Zhou 30-state (R5)

Hi-C Domains (Embryos) (R5)

Topological Boundaries (R5)

TAD Boundaries (Nuc. Cycle 14)

HiCseg Domains (Kc167) (R5)

Polytene TADs (R5)

GCSDI Models (R5)

Genes and Gene Prediction Tracks

FlyBase Pseudogenes

FlyBase Non-coding

Drosophila RefSeq Transcripts

piRNA Clusters (R5)

FlyBase 6.06 Genes

FlyBase 6.06 Proteins

FlyBase 6.06 Exons

FlyBase 6.06 CDS

FlyBase 6.06 Pseudogenes

FlyBase 6.06 Non-coding

ChIP Seq Tracks

Phantom Peaks (R5)

modENCODE Histones ChIP-Seq

PePr Histone Modifications Peaks

MUSIC Histone Modifications Peaks

Genome Mappability

modENCODE PolII ChIP-Seq

MUSIC PolII ChIP-Seq Peaks

PolII ChIP-Seq (Cell Lines)

RNA PolII X-ChIP-Seq

Inhibit Topoisomerases PolII ChIP-Seq

Basal Transcription Factors ChIP-Seq

GAF KD Differential Regions

Basal Transcription Factors ChIP-exo

ORGANIC Enrichment (S2 Cells)

Architectural Proteins ChIP-Seq (Kc167)

Architectural Proteins ChIP-Seq (S2)

Heat Shock Proteins ChIP-Seq (S2)

ChIP-Seq MBT Embryos

Henriques 2018 ChIP-Seq

Histone Variants ChIP-Seq (S2)

R-Loop DRIP-Seq (S2)

modENCODE Histone Modifications (R5)

modENCODE Chromosomal Proteins (R5)

modERN TF Peaks

ChIP-chip Tracks

Unique ChIP-chip Probes

Pausing Factors ChIP-chip (S2 Cells)

Wolbachia Tracks

wAna Alignments

wMel Alignments

Wolbachia Proteins

Expression and Regulation

Detected DHS Positions (Cell Lines) (R5)

DHS Read Density (Cell Lines) (R5)

Detected DHS Positions (Embryos)

DHS Read Density (Embryos)

TSS (Embryonic) (R5)

TSS (Celniker) (R5)

Combined modENCODE CAGE TSS

modENCODE CAGE Tag Clusters

modENCODE CAGE Read Density

Combined RAMPAGE TSS (R5)

RAMPAGE TSS Read Density (R5)

Combined RAMPAGE TSS (Replicate 2) (R5)

RAMPAGE TSS Read Density (Replicate 2) (R5)

Combined MachiBase TSS

MachiBase TSS Read Density

Combined Exo-seq TSS

Exo-seq Read Density

Exo-seq Tag Clusters

Exosome RNAi CAGE

Exosome RNAi CAGE Tag Clusters

PEAT (S2 Cells)

TES (Celniker) (R5)

TFBS HOT Spots (R5)

MACS STARR-seq Peaks

MACS STARR-seq Enrichment

MUSIC STARR-seq Peaks

MUSIC STARR-seq Enrichment

PePr STARR-seq Peaks

hkCP dCP STARR-Seq

Insulators (R5)

Origins of Replication (R5)

SNS Origins of Replication (R5)

EPDnew Promoters

Schor 2017 CAGE Peaks (R5)

REDfly Regulatory Elements

Core LJ 2012 GRO-Seq (R5)

Schaaf CA 2013 BG3 PRO-seq

Duarte FM 2016 PRO-seq

FStitch Nascent Transcripts

3'NT (S2 Cells)

CapSeq Tag Clusters

CapSeq Read Density

Start-Seq TSS (Larvae) (R5)

scRNAs (S2 Cells)

Permanganate ChIP-Seq (R5)

Embryos FAIRE-Seq

Schulz FAIRE-Seq

Embryos ATAC-Seq

3rd Instar Larvae ATAC-Seq

Eye Discs ATAC-Seq

MNase Tracks

MNase Accessibility (R5)

GAF vs. LacZ RNAi MNase

NELF RNAi MNase

NELF RNAi vs. Mock MNase

MBT Embryos MNase

RNA Seq Tracks

FlyBase Exon Junctions

Combined modENCODE RNA-Seq (Development) (R5)

modENCODE RNA-Seq (Development) (R5)

modENCODE RNA-Seq (Cell Lines)

Aggregated RNA-Seq Coverage

Comparative Genomics

Drosophila Conservation (36 Species)

RefSeq Drosophila Chain/Net

Drosophila Conservation (28 Species)

Drosophila Conservation (26 Species)

PhyloP (14 Species)

PhastCons (14 Species)

Conservation (14 Species)

Drosophila Chain/Net

(dm3) D. mel. Chain

(dm3) D. mel. Net

Variations

Variants in lacO Mutants (All)

Variants in lacO Mutants (Filtered)

UniProt Variants

DGRP TE Insertions (ngs_te_mapper) (R5)

DGRP TE Insertions (TEMP)

FlyVar EMS Screen

Repeats

Interrupted Rpts

Combined Library

Inverted Repeats

Updated Transcriptome Tracks

Combined modENCODE RNA-Seq (Development)

Combined Splice Junctions (Development)

modENCODE RNA-Seq (Development)

Combined modENCODE RNA-Seq (Tissues)

Combined Splice Junctions (Tissues)

modENCODE RNA-Seq (Tissues)

Combined modENCODE RNA-Seq (Cell Lines)

Combined Splice Junctions (Cell Lines)

modENCODE RNA-Seq (Cell Lines)

Combined RAMPAGE Embryos TSS

TSRchitect RAMPAGE Embryos TSS

TSRchitect Combined RAMPAGE TSS (Replicate 1)

TSRchitect RAMPAGE TSS Read Density (Replicate 1)

TSRchitect Combined RAMPAGE TSS (Replicate 2)

TSRchitect RAMPAGE TSS Read Density (Replicate 2)