Schema for TE Density - RepeatMasker Transposon Density (1kb window, 100bp step size)
  Database: DsimGB2    Primary Table: transposon_density    Row Count: 1   Data last updated: 2022-10-20
fieldexampleSQL type info
fileName /gbdb/DsimGB2/bbi/DsimGB2_R...varchar(255) values

This table points to a file in BigWig format.

Sample Rows

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

TE Density (transposon_density) Track Description


This track shows the density of transposon fragments identified by RepeatMasker in a 1kb sliding window (100bp step size) using the RepBase Drosophila library.


Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0. 1996-2010.

Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 2005;110(1-4):462-7.