Schema for Genome Mappability - Genome Mappability

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Schema for Genome Mappability - Genome Mappability

Database: dm6 Primary Table: art_619_10 Row Count: 1

field	example	SQL type	info
`fileName`	/gbdb/dm6/bbi/dm6_art_619_1...	`varchar(255)`	values

This table points to a file in BigWig format.

Sample Rows

fileName
/gbdb/dm6/bbi/dm6_art_619_10_HS20.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Genome Mappability (mappability) Track Description


	Description Simulated Illumina reads were produced by the ART read simulator using the D. melanogaster genome assembly. These simulated reads are then mapped against the D. melanogaster genome assembly using bwa with the aln algorithm. The reads for the 50bp SE Reads (10x) track were produced using the following parameters: `--fcov 10 --noALN --rndSeed 4135 --seqSys GA2 --len 50` References Huang W, Li L, Myers JR, Marth GT. ART: a next-generation sequencing read simulator. Bioinformatics. 2012 Feb 15;28(4):593-4. Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 2010 Mar 1;26(5):589-95.