Schema for Melting Temp. - Melting Temperature Estimated by dan
  Database: dm6    Primary Table: melting_temp    Row Count: 1
fieldexampleSQL type info
fileName /gbdb/dm6/bbi/dm6_melting_t...varchar(255) values

This table points to a file in BigWig format.

Sample Rows

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Melting Temp. (melting_temp) Track Description


This track shows the DNA melting temperature within a 9bp sliding window as estimated by the dan EMBOSS tool. The melting temperatures were determined using the following parameters:

-windowsize=9 -shiftincrement=1 -dnaconc=50 -saltconc=50 -mintemp=55


Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7.