Schema for 3'NT (S2 Cells) - Three Prime Position of Nascent Transcript (3'NT)
  Database: dm6    Primary Table: GSM1193877_H2Av_3NT_minus    Row Count: 1   Data last updated: 2022-10-20
fieldexampleSQL type info
fileName /gbdb/dm6/bbi/3NT/GSM119387...varchar(255) values

This table points to a file in BigWig format.

Sample Rows
 
fileName
/gbdb/dm6/bbi/3NT/GSM1193877_H2Av_3NT_minus.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

3'NT (S2 Cells) (GSE49106_3NT) Track Description
 

Description

These tracks show the 3' position of nascent transcripts (3' NT) for RNAi treated Drosophila S2 cells.

These datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE49106. The results were lifted from the D. melanogaster release 5 assembly to the release 6 assembly.

Credits

Weber CM, Ramachandran S, Henikoff S. Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase. Mol Cell. 2014 Mar 6;53(5):819-30.