Schema for Permanganate ChIP-Seq (R5) - Permanganate ChIP-Seq on Drosophila Cell Lines (R5)
  Database: dm6    Primary Table: GSM1179209_S2R_HS_T    Row Count: 1   Data last updated: 2022-10-20
fieldexampleSQL type info
fileName /gbdb/dm6/bbi/KMnO4ChIPSeq/...varchar(255) values

This table points to a file in BigWig format.

Sample Rows
 
fileName
/gbdb/dm6/bbi/KMnO4ChIPSeq/GSM1179209_S2R_HS_T.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Permanganate ChIP-Seq (R5) (KMnO4ChIPSeq) Track Description
 

Description

These tracks show the read coverage from permanganate ChIP-Seq analysis of Drosophila non-heat shocked (NHS) and heat shocked S2R+ cells, and non-heat shocked BG3 cells.

Credits

The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE46620. The results were lifted from the D. melanogaster release 5 assembly to the release 6 assembly.

Li J, Liu Y, Rhee HS, Ghosh SK, Bai L, Pugh BF, Gilmour DS. Kinetic competition between elongation rate and binding of NELF controls promoter-proximal pausing. Mol Cell. 2013 Jun 6;50(5):711-22.