Schema for PRO-seq (R5) - PRO-seq for Drosophila S2 Cells (R5)
  Database: dm6    Primary Table: GSM1032758_PROseq_01N_plus    Row Count: 1   Data last updated: 2022-10-20
fieldexampleSQL type info
fileName /gbdb/dm6/bbi/PROseq/GSM103...varchar(255) values

This table points to a file in BigWig format.

Sample Rows
 
fileName
/gbdb/dm6/bbi/PROseq/GSM1032758_PROseq_01N_plus.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

PRO-seq (R5) (PROSeq) Track Description
 

Description

These tracks show the read coverage from Precision Run-On and sequencing (PRO-seq) of Drosophila S2 cells. The evidence tracks also include results from a modified version of PRO-seq that was designed to detect initiation sites (PRO-cap).

Credits

The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE42117. The results were lifted from the D. melanogaster release 5 assembly to the release 6 assembly.

Kwak H, Fuda NJ, Core LJ, Lis JT. Precise maps of RNA polymerase reveal how promoters direct initiation and pausing. Science. 2013 Feb 22;339(6122):950-3.