Schema for MACS STARR-seq Enrichment - Log Likelihood Ratio of STARR-seq Enrichment Versus Input

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Schema for MACS STARR-seq Enrichment - Log Likelihood Ratio of STARR-seq Enrichment Versus Input

Database: dm6 Primary Table: S2_STARRseq_logLR Row Count: 1

field	example	SQL type	info
`fileName`	/gbdb/dm6/bbi/dm6_S2_macs_l...	`varchar(255)`	values

This table points to a file in BigWig format.

Sample Rows

fileName
/gbdb/dm6/bbi/dm6_S2_macs_logLR.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

MACS STARR-seq Enrichment (STARRseq_logLR) Track Description


	Description This track shows the positions of cell-type specific enhancers identified by Self-Transcribing Active Regulatory Region Sequencing (STARR-Seq) in BG3, S2, and ovarian somatic cells (OSC). The log-likelihood enrichment profiles were calculated by MACS. References Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. Yáñez-Cuna JO, et al. Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features. Genome Res. 2014 Jul;24(7):1147-56. Arnold CD et al., Genome-wide quantitative enhancer activity maps identified by STARR-seq. Science. 2013 Mar 1;339(6123):1074-7.