Schema for PEAT (S2 Cells) - Paired-End Analysis of Transcription Start Sites for S2 Cells
  Database: dm6    Primary Table: GSE103177_PEAT_S2_minus    Row Count: 1   Data last updated: 2022-10-20
fieldexampleSQL type info
fileName /gbdb/dm6/bbi/PEAT_S2/GSM27...varchar(255) values

This table points to a file in BigWig format.

Sample Rows
 
fileName
/gbdb/dm6/bbi/PEAT_S2/GSM2756645_PEAT.minus.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

PEAT (S2 Cells) (tss_GSE103177_PEAT_S2) Track Description
 

Description

These tracks show the distributions of putative transcription start sites based on the Paired-End Analysis of Transcription Start Sites (PEAT) of D. melanogaster S2 cells.

The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE103177.

References

Ibrahim MM, Karabacak A, Glahs A, Kolundzic E, Hirsekorn A, Carda A, Tursun B, Zinzen RP, Lacadie SA, Ohler U. Determinants of promoter and enhancer transcription directionality in metazoans. Nat Commun. 2018 Oct 26;9(1):4472.