Schema for RAMPAGE TSS Read Density (R5) - RAMPAGE Read Density for Different Developmental Stages (R5)
  Database: dm6    Primary Table: RAMPAGE_E09h_minus    Row Count: 1   Data last updated: 2022-10-20
fieldexampleSQL type info
fileName /gbdb/dm6/bbi/RAMPAGE/GSM88...varchar(255) values

This table points to a file in BigWig format.

Sample Rows
 
fileName
/gbdb/dm6/bbi/RAMPAGE/GSM883771_Dmel09_E09h_minus.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RAMPAGE TSS Read Density (R5) (tss_RAMPAGE) Track Description
 

Description

These tracks show the density of RAMPAGE reads from different developmental stages of D. melanogaster.

Credits

The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE36212. The results were lifted from the D. melanogaster release 5 assembly to the release 6 assembly.

Batut P, Dobin A, Plessy C, Carninci P, Gingeras TR. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Res. 2013 Jan;23(1):169-80.