Schema for Aggregated RNA-Seq Coverage - NCBI SRA Aggregated RNA-Seq Coverage (Oliver Lab)
  Database: dm6    Primary Table: Oliver_rnaseq_Combined    Row Count: 1   Data last updated: 2022-10-20
fieldexampleSQL type info
fileName /gbdb/dm6/bbi/Oliver_rnaseq...varchar(255) values

This table points to a file in BigWig format.

Sample Rows

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Aggregated RNA-Seq Coverage (Oliver_rnaseq_Combined) Track Description


This track shows the aggregated RNA-Seq read coverage from 14,423 RNA-Seq datasets for D. melanogaster. The RNA-Seq bigWig files were produced by Justin Fear and Brian Oliver at the Developmental Genomics Section of the NIH Laboratory of Cellular and Developmental Biology. The RNA-Seq datasets were obtained from the NCBI Gene Expression Omnibus (GEO) database under the accession number GSE117217.

The RNA-Seq read coverage data for the 14,423 samples were combined using the bigWigMerge utility developed by the UCSC Genome Bioinformatics Group.


Remapping the SRA: Drosophila melanogaster RNA-Seq data from the Sequence Read Archive (fruit fly). BioProject accession number PRJNA481740.