Schema for Aggregated RNA-Seq Coverage - NCBI SRA Aggregated RNA-Seq Coverage (Oliver Lab)

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Schema for Aggregated RNA-Seq Coverage - NCBI SRA Aggregated RNA-Seq Coverage (Oliver Lab)

Database: dm6 Primary Table: Oliver_rnaseq_Combined Row Count: 1 Data last updated: 2022-10-20

field	example	SQL type	info
`fileName`	/gbdb/dm6/bbi/Oliver_rnaseq...	`varchar(255)`	values

This table points to a file in BigWig format.

Sample Rows

fileName
/gbdb/dm6/bbi/Oliver_rnaseq/Oliver_rnaseq.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Aggregated RNA-Seq Coverage (Oliver_rnaseq_Combined) Track Description


	Description This track shows the aggregated RNA-Seq read coverage from 14,423 RNA-Seq datasets for D. melanogaster. The RNA-Seq bigWig files were produced by Justin Fear and Brian Oliver at the Developmental Genomics Section of the NIH Laboratory of Cellular and Developmental Biology. The RNA-Seq datasets were obtained from the NCBI Gene Expression Omnibus (GEO) database under the accession number GSE117217. The RNA-Seq read coverage data for the 14,423 samples were combined using the bigWigMerge utility developed by the UCSC Genome Bioinformatics Group. Credits Remapping the SRA: Drosophila melanogaster RNA-Seq data from the Sequence Read Archive (fruit fly). BioProject accession number PRJNA481740.