Schema for modENCODE RNA-Seq (Cell Lines) - modENCODE RNA-Seq for Different Cell Lines

Database: dm6 Primary Table: ENCSR788YTN_1_Kc167_minus Row Count: 1 Data last updated: 2022-10-20

field	example	SQL type	info
`fileName`	/gbdb/dm6/bbi/modENCODE_RNA...	`varchar(255)`	values

This table points to a file in BigWig format.

modENCODE RNA-Seq (Cell Lines) (modENCODE_rnaseq_cells) Track Description

Description

These tracks show the strand-specific RNA-Seq coverage for different D. melanogaster cell lines. The values in the coverage tracks correspond to the number of reads per million mapped reads (RPM) at each genomic position.

The RNA-Seq datasets were obtained from the ENCODE data portal at UCSC through the following accession numbers:

Track ID	Experiment Accession	Cell Line	Library Extraction Method	Biological Replicate
ENCSR286PNP_1_BG3	ENCSR286PNP	ML-DmBG3-c2	Trizol	1
ENCSR359XXD_1_BG3	ENCSR359XXD	ML-DmBG3-c2	RNeasy	1
ENCSR792UNG_1_BG3	ENCSR792UNG	ML-DmBG3-c2	Trizol	1
ENCSR792UNG_2_BG3	ENCSR792UNG	ML-DmBG3-c2	Trizol	2
ENCSR934ILF_1_BG3	ENCSR934ILF	ML-DmBG3-c2	Trizol	1
ENCSR788YTN_1_Kc167	ENCSR788YTN	Kc167	Trizol	1
ENCSR992GOY_1_Kc167	ENCSR992GOY	Kc167	Trizol	1
ENCSR045CJI_1_S2DRSC	ENCSR045CJI	S2-DRSC	RNeasy	1
ENCSR467UKU_1_S2R	ENCSR467UKU	S2R+	RNeasy	1

References

Brown JB, et al. Diversity and dynamics of the Drosophila transcriptome. Nature. 2014 Aug 28;512(7515):393-9.